Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00556 ATGGCTTCGGAGACAAAGATCGTGAATCTGGCTGAGGAAGCCAAGCTCGCCAGGGAAGGGGTGAAGACTCCCTCCTATGCTTTTACCACCATCTGCAAGTCTCTCGTCGCCGGTGGAGTCGCCGGAGGAGTATCACGAACGGCAGTTGCTCCTCTGGAAAGGTTGAAGATTTTGCTACAGGTTCAGAATCCACACAACATAAAATACAATGGAACAATTCAAGGTCTTAAATATATATGGAGAACTGAAGGTTTTCGTGGGCTGTTCAAAGGGAATGGTACTAATTGTGCTCGTATTGTCCCGAATTCTGCGGTGAAGTTCTTCAGTTATGAGCAAGCTTCCAAGGGTATACTACAACTGTATCAGAAACAAACTGGAAATGAGGATGCTCAGCTGACTCCTCTTTTGCGTCTTGGGGCTGGAGCTTGTGCGGGAATAATTGCCATGTCTGCAACTTATCCGATGGACATGGTTCGAGGCAGAATAACTGTACAGACAGAGAAGTCCCCTTACCAGTATAGAGGAATGTTTCATGCTCTGTCAACTGTACTCAGAGAAGAAGGTCCACGTGCTTTATATAAGGGTTGGCTTCCTTCAGTCATTGGAGTTATTCCTTATGTCGGTCTCAACTTTGCTGTGTATGAGTCTTTGAAAGATTGGTTAGTTAAATCCAATCCATTTGGTATAGTTCAAGATTCTGAGCTGAGTGTGACAACTCGCCTGGCTTGTGGTGCTGCAGCTGGAACTATGGGACAAACTGTTGCTTACCCTCTTGATGTCATTCGTCGAAGAATGCAGATGGTGGGTTGGAACCATGCTGCTTCTGTTGTAGCTGGTGATGGAAGAGGGAAGGTACCGCTTGAATACACTGGCATGATTGACGCATTTAGGAAAACTGTTCGGTATGAGGGCTTTGGTGCATTATACAAGGGTCTGGTGCCAAATTCTGTAAAGGTGGTCCCATCGATAGCAATTGCGTTTGTAACGTATGAGGTGGTGAAGGACATTTTAGGTGTGGAGATCAGAATATCAGACTGA 1038 0.4576 MASETKIVNLAEEAKLAREGVKTPSYAFTTICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILQLYQKQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLVKSNPFGIVQDSELSVTTRLACGAAAGTMGQTVAYPLDVIRRRMQMVGWNHAASVVAGDGRGKVPLEYTGMIDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDILGVEIRISD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00556 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 220 IPR018108 -
Spst6g00556 345 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Spst6g00556 345 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Spst6g00556 345 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Spst6g00556 345 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Spst6g00556 345 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
Spst6g00556 345 PRINTS Mitochondrial carrier protein signature 244 266 IPR002067 GO:0055085
Spst6g00556 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Spst6g00556 345 PANTHER SOLUTE CARRIER FAMILY 25 30 339 - -
Spst6g00556 345 Gene3D Mitochondrial carrier domain 27 339 IPR023395 -
Spst6g00556 345 ProSiteProfiles Solute carrier (Solcar) repeat profile. 235 336 IPR018108 -
Spst6g00556 345 SUPERFAMILY Mitochondrial carrier 31 332 IPR023395 -
Spst6g00556 345 Pfam Mitochondrial carrier protein 132 224 IPR018108 -
Spst6g00556 345 Pfam Mitochondrial carrier protein 234 337 IPR018108 -
Spst6g00556 345 Pfam Mitochondrial carrier protein 31 116 IPR018108 -
Spst6g00556 345 FunFam Mitochondrial substrate carrier 27 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00556 Spst-Chr6 5104580 5109200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00556 35 340 EF-hand Containing Proteins AT5G51050 39.739 1.45e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00556 K14684 - gmx:100777048 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00556 6 5104580 5109200 Spst4g01942 4 60050965 60055238 PCT