Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01942 ATGGCTTCGGAGAATGTGAAGTCCGGGGAATCCGCCGTCACCACCTTCGTCAGCCTCGCCGAGGAGGCCAAGCTCGCCCGAGAAGGCGTTGTCAAGGCTCCCAGCTACGCGCTCGGCAGCATCTGCAAGTCACTCGTCGCCGGTGGCGTCGCCGGAGGAGTGTCACGTACTGCAGTTGCACCGCTGGAACGGTTGAAAATATTGCTACAGGTCCAAAATCCTCATAACATTAAATACAATGGAACTATTCAGGGCCTAAAATATATATGGAGAACTGAAGGTTTCCGTGGACTTTTCAAAGGCAATGGTACTAATTGTGCTCGAATTGTCCCTAATTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAAGGTATACTGTACATGTATCAGCAGCAAACTGGAAATGAGGATGCTCAACTGACTCCTCTTTTACGTCTTGGAGCTGGAGCTTGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGACATGGTTCGAGGCAGGATTACTGTGCAGACCGAGGCATCCCCGTATCAGTATAGAGGAATGTTTCATGCTTTGTCTACTGTGCTTAGGGAGGAAGGTCCCCGTGCTTTATATAAGGGCTGGCTTCCTTCAGTTATTGGAGTTATTCCTTATGTAGGTCTCAACTTTGCTGTCTATGAGTCTCTAAAAGATTGGTTGATTAAATCCAACCCACTTGGTCTAGCTGATAATTCTGAGTTGAGTGTGACAACACGTCTGGCTTGTGGTGCTGCTGCTGGAACTGTAGGACAAACTGTTGCTTACCCTCTTGACGTTATTCGTCGAAGGATGCAGATGGTAGGTTGGAACCATGCTGCTTCTGTTCTGACTGGTGATGGAAGAGGCAAAGTCCCTCTTGAATACACTGGAATGATCGATGCATTCAGGAAAACTGTTCAGCACGAGGGATTCGGTGCACTATACAAGGGTCTTGTGCCCAACTCTGTAAAGGTGGTCCCATCCATAGCAATTGCATTTGTAACATACGAGATGGTGAAGGACATTTTAGGAGTTGAGATCAGAATATCAGACTAA 1068 0.47 MASENVKSGESAVTTFVSLAEEAKLAREGVVKAPSYALGSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYMYQQQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEASPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSNPLGLADNSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVLTGDGRGKVPLEYTGMIDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEIRISD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01942 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
Spst4g01942 355 Gene3D Mitochondrial carrier domain 38 349 IPR023395 -
Spst4g01942 355 Pfam Mitochondrial carrier protein 244 347 IPR018108 -
Spst4g01942 355 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Spst4g01942 355 Pfam Mitochondrial carrier protein 41 126 IPR018108 -
Spst4g01942 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Spst4g01942 355 FunFam Mitochondrial substrate carrier 37 349 - -
Spst4g01942 355 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Spst4g01942 355 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Spst4g01942 355 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Spst4g01942 355 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Spst4g01942 355 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Spst4g01942 355 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Spst4g01942 355 PANTHER SOLUTE CARRIER FAMILY 25 40 349 - -
Spst4g01942 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 346 IPR018108 -
Spst4g01942 355 SUPERFAMILY Mitochondrial carrier 41 342 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01942 Spst-Chr4 60050965 60055238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01942 45 350 EF-hand Containing Proteins AT5G51050 39.088 5.42e-65 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01942 K14684 - gmx:100814032 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01942 4 60050965 60055238 Spst4g01942 4 60050965 60055238 ECH
Spst6g00556 6 5104580 5109200 Spst4g01942 4 60050965 60055238 PCT