Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00539 ATGGCGGGAGAAACATCTTGGATAAGCCACTATGATGACAGACAGAGGGAGACCGGGGTGTTTGACTCATTTTTAGAACTTGGTGAGGAAGGTGAAAAAGAAGCATCTGCTGTTTCTTTGGATGTCATTTTGCCAGATGACTTGTTGGAACGAATCCTAGCTTATCTACCCATTGCAAGCATTTTTAGAGCTGGTTGTGTGTCTAAGAGATGGCATGAAATTGTTAATTCGGGGAGGTTTTTATGGAACCTTTCCAATGTTCTACCGCAGAAACCATGGTACTTTATGTTTACAAGCTCTGATGAACCAGTTGGTTATGCTTTCGATCCTGTTCTTCGTAAATGGTATAACATTGAACTTCCATGCATTGGTACTTCAAATTGGTTCATTGCTTCATCATGTGGCATGGTCTGCTTCATGGACAATGACAGCAGAAGTGAATTATGCATCTGCAACCCAATTACCAAAACCTACAGGAAGCTCGAGGAGCCTCCAGGTTTGAAATTTTCTGATTACAGTGCATTAGCAATCTCAGTCAACAGGGAGTCTCACTTTTATTCTGTGGCAATTGTAAAATCTAAACAAGTTCCTGAGAACTTCTTCCAGTGGGATATCTCAATCCATATATACAATTCAGAGAACACAACTTGGGTGACCTCTTTAACAGAAGTTTTGATGGGGTGGAGAGGTGGTGATGAGAGTGTGATATGCAATGGGATGCTATACTTCTTAGTTTATTCAACTGGGGGTGGCCAACCTGAAAATCGTCATGCTCTAATTGCATATAACATGTCTAACCGTTCTTCTCAAGGTAGCTTAACAAGGAGCTTTATTCCAGTACCTTGTTCTCTAACTTGTGGCCGACTGATGAATCTGAAGGAGAAACTTGTAATGGTGGGAGGAATTGGTAAACCAGATCGACCGGACATAATAAAAGGAATTGGTATCTGGCTTCTAAATGATAAGAGGTGGGAAGAGATTGGTCGAATGCCCCAAAAATTCTTCCAAGGCTTTGGAGAGTTTGATGATGTTTTTGCTAGCAGTGGTGCAGATGATCTGATATACATTCAGAGTTACGGAGCTCCGGCACTTCTCATATTTGACATGAACCATAAACAATGGAAATGGTCACAGAGGTGCCCTGTAACAAAACGATTCCCGCTGCAGCTTTTTACCGGCTTTTGCTTTGAGCCTAGACTTGAAATTGCTCCATAG 1215 0.4173 MAGETSWISHYDDRQRETGVFDSFLELGEEGEKEASAVSLDVILPDDLLERILAYLPIASIFRAGCVSKRWHEIVNSGRFLWNLSNVLPQKPWYFMFTSSDEPVGYAFDPVLRKWYNIELPCIGTSNWFIASSCGMVCFMDNDSRSELCICNPITKTYRKLEEPPGLKFSDYSALAISVNRESHFYSVAIVKSKQVPENFFQWDISIHIYNSENTTWVTSLTEVLMGWRGGDESVICNGMLYFLVYSTGGGQPENRHALIAYNMSNRSSQGSLTRSFIPVPCSLTCGRLMNLKEKLVMVGGIGKPDRPDIIKGIGIWLLNDKRWEEIGRMPQKFFQGFGEFDDVFASSGADDLIYIQSYGAPALLIFDMNHKQWKWSQRCPVTKRFPLQLFTGFCFEPRLEIAP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00539 404 ProSiteProfiles F-box domain profile. 44 85 IPR001810 GO:0005515
Spst6g00539 404 SMART fbox_2 44 84 IPR001810 GO:0005515
Spst6g00539 404 SUPERFAMILY Galactose oxidase, central domain 105 381 IPR011043 -
Spst6g00539 404 SUPERFAMILY F-box domain 40 143 IPR036047 GO:0005515
Spst6g00539 404 PANTHER F-BOX FAMILY PROTEIN 32 401 IPR045048 -
Spst6g00539 404 FunFam F-box/kelch-repeat protein At3g61590 family 90 388 - -
Spst6g00539 404 Gene3D - 89 392 IPR015915 GO:0005515
Spst6g00539 404 Gene3D - 34 84 - -
Spst6g00539 404 Pfam F-box-like 44 83 IPR001810 GO:0005515
Spst6g00539 404 FunFam F-box/kelch-repeat protein At3g61590 37 84 - -
Spst6g00539 404 CDD F-box_SF 44 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00539 Spst-Chr6 4952051 4953265 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00539 - - gmx:100817678 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00539 6 4952051 4953265 Spst4g01908 4 59743581 59744798 PCT