Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g02088 ATGGGGGCACAGCAAACGAACTTCCGGATTTCCAGCGGGTTGTTTTCTGCTTTTGCTCAGAAGGAAAAATCACTTGGTACAGCTGTGATGGTTGCGAACGACTATTTTCCTCCTTTGTTTAGTGTGGCCCCAATGATGGACTGGACAGATCATCACTACCGGACGCTGGCACGTCTGTTGTCGAAACACACTTGGCTCTACACGGAGATGCTTGCTGCTGAAACAATTGTTTATCAAAAGGGAAATCTGGACAGATTCTTGGCGTATGCTCCAGATCAACATCCTATTGTGCTTCAAATTGGTGGAAGTAACTTAGATAATTTGGCTAAAGCAACTGAACTTGCCAATCGTTATTGCTATGATGAGATCAACTTCAACTGTGGATGCCCAAGTCCTAGAGTAGCTGGACGTGGATGCTTTGGCGTACGTCTTATGCTTGATCCAAAGTTTGTTGCAGAGGCTATTTCATTAATTGCTGCCAATACAAATGTACCTGTCACAGTCAAATGTCGAATTGGTGTGGATGATCATGATTCTTACAATGAATTATGTAAGGTTTCTTCTCTGTCACCTGCTAAGCATTTCATAATTCACTCAAGGAAGGCACTGCTCAGGGGCCTTAGCCCAGCAGAAAATCGGAGTATTCCTCCACTGAAATATGAATACTTTTATGGCCTCTTACGAGACTTTCCTGACTTAACATTTACAATCAATGGTGGTATTACTAGCATTGATGAGATCAATGGAGCTCTAAAGGCTGGGGCCCATGGTGTTATGGTTGGACGTGCAGCATACCACAACCCTTGGCATATTTTGGGACATGCTGATACAGCAATTTATGGTGCACCAAGCAGTGATCTTACACGTCGTCAGGTCCTTGAGAAATATCAAGTATATGGGGACTCAGTGTTACGTCAATATGGACTTGGGCCAACTGTGCGAGATATTGTGAAGCCTTTACTTGGCTTTTTTCATTCTGAGCCTGGGAATGGACTATGGAAGCGCAAAGTAGATTCAGCTGTCCAAACTTGCACGACAATTAAATCATTTTTTGAAGAAACCCTTGTAGCAATTCCTGACTCGGTCTTGGATTCACCGGTTGCGGAACCACAGTATGGTCGTGGAGATCTTTTTGCTAACATGCACAGCTTGCTACCTCCACCATACAGAATAAGAGAAGAGGATACCATATAA 1194 0.4363 MGAQQTNFRISSGLFSAFAQKEKSLGTAVMVANDYFPPLFSVAPMMDWTDHHYRTLARLLSKHTWLYTEMLAAETIVYQKGNLDRFLAYAPDQHPIVLQIGGSNLDNLAKATELANRYCYDEINFNCGCPSPRVAGRGCFGVRLMLDPKFVAEAISLIAANTNVPVTVKCRIGVDDHDSYNELCKVSSLSPAKHFIIHSRKALLRGLSPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSIDEINGALKAGAHGVMVGRAAYHNPWHILGHADTAIYGAPSSDLTRRQVLEKYQVYGDSVLRQYGLGPTVRDIVKPLLGFFHSEPGNGLWKRKVDSAVQTCTTIKSFFEETLVAIPDSVLDSPVAEPQYGRGDLFANMHSLLPPPYRIREEDTI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g02088 397 CDD DUS_like_FMN 40 269 IPR035587 -
Spst5g02088 397 Pfam Dihydrouridine synthase (Dus) 42 344 IPR035587 -
Spst5g02088 397 Gene3D Aldolase class I 37 274 IPR013785 -
Spst5g02088 397 Gene3D - 284 355 - -
Spst5g02088 397 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 33 393 IPR004653 GO:0002943|GO:0017150
Spst5g02088 397 SUPERFAMILY FMN-linked oxidoreductases 40 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g02088 Spst-Chr5 56329411 56340062 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g02088 K05539 - gmx:100785422 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02936 2 29089650 29098454 Spst5g02088 5 56329411 56340062 PCT