Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02936 ATGGAAGAAAAACTCTGTCTAGTGTTTGTCTGGAATCTGGATAAGCTGCGCACACACCAACTTCACCAACCGAACCCATTCTGGAATCCGACGCCGGCGTCATGGTTTACTGAGAGTGATGAGATGGCGAAGCTTGGAGGATATTCCCTGGCTGTTTCATTTGCTCCCATAGGTTCCATTATCGTTAAAAACAATTGCAGATTCCAAGTAGTTATATCTCGTAGGAAGAAGTCCAGCTATAGGTTATTTTCTACTCATGGTCCGAAAGCACGATTACATGATAAGCCTGGAGTGGTTTCCAGATACTATCTTCCTCATTGGTTTAGGTGTGTGCCTGGTGATGGTATCTCTGCACCTTTTTTTTTTGGTGTCATCTGCCTTGTTGCTCCAATGATGGAGTGGACGGACAATCACTATAGAACTCTAGCACGCCTCATATCAAAACATGCTTGGCTGTACACGGAGATGGTTGCAGCTGAGACAATTGTTCATCAAAAAGACAATCTGGACAGATTCTTGGCATATTCTCCAGACCAACATCCCATTGTGCTTCAAATTGGAGGGAGTAATATAGAAAATTTGGCTAAAGCAACTGAGCTTGCTAATGCTTATTGCTATGACGAGATCAACTTAAACTGTGGATGCCCTAGTCCAAAAGTTGCTGGACATGGGTGTTTTGGAGTGAGCCTTATGCTTAACCCCAAGTTTGTTGCTGAGGCCATGTCAGCAATTGCTGCCAGCACAAATGTACCTGTCAGTGTCAAATGTCGAATTGGCGTGGATGATCATGATTCTTACAATGAACTTTGTGATTTCATATACCAGGTTTCTTCTTTATCACCTACTAAGCATTTCGTAATTCACTCAAGGAAGGCACTGCTCAATGGCATTAGCCCTGCTGAAAATAGGAGCATTCCTCCGCTAAAGTATGAATACTTCTATGGCCTCCTGCGTGACTTTCCTGACCTAACATTTACCATAAATGGTGGCATTACTAGTGTTGAAGAGGTCAATGCAGCTCGAGAAGCTGGGGCTCATGGTGTTATGGTTGGACGTGCAGCGTACAACAACCCTTGGCATATTTTGGGAAACGTAGATTCCGCAGTTTATGGTGCACCAAGCTGTGGTCTTACACGTCGTCAGGTCCTTGAAAAATATCTAACCTATGGGGATACGGTCTTGGGAAAATATGGACGTAGGCCAACTATGCGTGACATTGTGAAGCCTCTACTCAATCTTTTCCATTCAGAACCTGGGAATGGACTTTGGAAGCGCAAAGCAGATGCTGCTTTCAAAAATTGCACGACAGTCGAATCATTTTTTGAAGAAACCCTTGTGGCAATTCCCGACTCAGTATTGGATTCGCCTGTTGCCAGACCACCACCTGGCCGTGGAGATCTTTTTGTTAACATACATAATTTATTGCCTCCGCCATACAGAACAAGAGAAGAAGTAATCATTTGCGCTTAA 1470 0.4388 MEEKLCLVFVWNLDKLRTHQLHQPNPFWNPTPASWFTESDEMAKLGGYSLAVSFAPIGSIIVKNNCRFQVVISRRKKSSYRLFSTHGPKARLHDKPGVVSRYYLPHWFRCVPGDGISAPFFFGVICLVAPMMEWTDNHYRTLARLISKHAWLYTEMVAAETIVHQKDNLDRFLAYSPDQHPIVLQIGGSNIENLAKATELANAYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPKFVAEAMSAIAASTNVPVSVKCRIGVDDHDSYNELCDFIYQVSSLSPTKHFVIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVEEVNAAREAGAHGVMVGRAAYNNPWHILGNVDSAVYGAPSCGLTRRQVLEKYLTYGDTVLGKYGRRPTMRDIVKPLLNLFHSEPGNGLWKRKADAAFKNCTTVESFFEETLVAIPDSVLDSPVARPPPGRGDLFVNIHNLLPPPYRTREEVIICA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02936 489 Gene3D Aldolase class I 124 364 IPR013785 -
Spst2g02936 489 CDD DUS_like_FMN 128 359 IPR035587 -
Spst2g02936 489 Gene3D - 376 438 - -
Spst2g02936 489 FunFam tRNA-dihydrouridine(20/20a) synthase 124 370 - -
Spst2g02936 489 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 127 483 IPR004653 GO:0002943|GO:0017150
Spst2g02936 489 Pfam Dihydrouridine synthase (Dus) 128 436 IPR035587 -
Spst2g02936 489 SUPERFAMILY FMN-linked oxidoreductases 127 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02936 Spst-Chr2 29089650 29098454 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02936 K05539 - gmx:100779457 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02936 2 29089650 29098454 Spst2g02936 2 29089650 29098454 ECH
Spst2g02936 2 29089650 29098454 Spst5g02088 5 56329411 56340062 PCT