Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g01827 ATGATTTCAATAAAGAGAAGACAAAGGGGTGCTCCAGTCACAATGCACTCAGTTGGCCCTCAAGTTAGTCCTAGTAGGCAAGATGACGACTACAATCTGAGGGAGACCGATCCACAGCTCGGGGGTGAGCGGTGGCCTAATGCCAGAAGAGGGTGGATGAGTGGTGGTGAAAGATTCACAAGCACACATGACCTTGTTGAGCAGATGTTCTATCTGTATGTTAGGGTAGTGAAAGCCAAGGATCTTCACCACAACACTCTTACCTCAAGCTGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAAGGGAGAACAAAGCACATAGAGAACAAAACGAACCCAGAATGGAACCAAGTCTATGCTTTCTCCAAAGACAGAATTCAATCTTCTGTTTTGGAAGTCATAGTGAAAGACAAAGAAATGTTGGGAAGAGATGATTATATTGGAAGGGTGGCATTTGATCTAAATGAGGTTCCGACCAAAGTTCCCCCAGACAGTCCACTGGCTCCTCACTGGTACAGACTCGAGGGCCAGCGAGGAGGTGATATCATGCTTGCAGTGTGGATGGGAACTCAAGCTGATGAGGCATTCTCAGAGGCTTGGCATTCTGATGCTGCCACTGTGTATGGAGAGGGAGTTTTCAATGTCAGATCAAAGGTTTATTTGTCACCAAAACTGTGGTATCTCAGAGTGTATGTCATCGAAGCACAAGATGTGATACCAGGTGACAGAAACCGGCTGCCAGAGGTTTTTGTCAAGGCTCAGATGGGGAGCCAAGTGTTGAAGACCAAGATATGTCCAACTAGGACAACCACACCACTTTGGAATGAAGATTTGGTCTTTGTTGCAGCTGAACCATTTGAGGAGAAGTTGACAATCACTGTGGAGGATCGCGTGCACCCTTCAAAAGATGAAGTACTTGGGAAGATAATCTTGCCATTGACCCTCTTTGAGAAGCGGCTAGACCACAGGCCAGTTCATTCGCGCTGGTTCAATCTTGAGAAGTTTGGTTTTGGAGTGATGGAAGCTGATAGGAGAAATGAGCTTAAATTTTCAAGCAGGATTCACCTAAGAATTTGCCTTGAAGGTGGATACCACGTCCTTGATGAGTCCACTTTGTACTCAAGTGACCAAAGACCAACATCTAGACAGCTATGGAAGGAGCCTATTGGGGTAATTGAAGTAGGCATCTTAGGAGCACAGGGACTCCTCCCAATGAAGATGAGGGATGGCCATGGTAGCACAGATGCATACTGTGTTGCCAAGTACGGGCAAAAATGGGTCAGAACCCGAACAATTCTTGACACTTACAGTCCAAAGTGGAATGAGCAATACACATGGGAGGTTTATGATCCTTGCTCTGTAATAACACTTGGTGTTTTTGACAATTGCCATTTAGGTGGAAGTGAAAAAGCCACTCCCGACACTGCAGCCAGGGATACAAGAATCGGAAAGGTTAGAATTAGACTCTCAACACTTGAAGCTAGTAGAATATACACTCACAGTTATCCACTTCTTGTTTTGCACCCACATGGTGTCAAGAAAATGGGCGAGCTTCAGCTAGCCGTGAGATTCACTAGCCTCTCATTGGCTAACATGATTTACATTTATGGTCAACCCTTGCTTCCAAAGATGCATTACTTGCGCCCTTTCACAGTTAATCAAATAGAGAGTTTGAGGTACCAAGCCATGAACATTGTGGCTGGGAGGCTTGGAAGAGCTGAACCTCCCCTCAGGAGGGAGGTGGTGGAGTACATGTTGGATGTTGACTCCCATATGTGGAGCATGAGAAGAAGCAAAGCCAACTTCTTCCGCATCATGTCGCTTTTCTCTGGCATCATCTCAATGGGGCAGTGGTTTAGCCAAGTTTGCCATTGGAAGAGCCCTGTCACATCCATTCTAGTTCACATTCTCTTCCTGATACTCATTTGCTACCCTGAATTGATACTTCCAACTTTGTTCCTATACATGTTCTTGATTGGCCTATGGAACTATAGGTTTAGGCCTAGAAACCCACCTCACATGGACACAAAACTCTCATGGGCAGAAGCACTTCACCCTGATGAACTTGATGAAGAGTTTGACACATTCCCAACTTCTAGACCACATGATGTGGTGAGAATGAGGTATGACAAGCTTAGAAGTGTTGCAGGAAGGATTCAAACAGTTGTTGGAGACATAGCAACGCAGGGGGAGAGGTTTCATTCTCTACTAAGTTGGAGAGACACCCGAGCCACCAGCCTCTTCGTAGTGTTTAGTTTGTGTTCAGCTGTGGTGCTGTATGCAACACCACCAAAAGTGGTGGCTATGGTAACAGGTTTGTATTATCTAAGGCATCCAAAGTTTCGTAGCAAACTTCCTTCTGTACCCAGCAACTTCTTCAAGAGGCTTCCAGCTAGAACAGACAGCATGCTATGA 2421 0.4564 MISIKRRQRGAPVTMHSVGPQVSPSRQDDDYNLRETDPQLGGERWPNARRGWMSGGERFTSTHDLVEQMFYLYVRVVKAKDLHHNTLTSSCDPYVEVKLGNYKGRTKHIENKTNPEWNQVYAFSKDRIQSSVLEVIVKDKEMLGRDDYIGRVAFDLNEVPTKVPPDSPLAPHWYRLEGQRGGDIMLAVWMGTQADEAFSEAWHSDAATVYGEGVFNVRSKVYLSPKLWYLRVYVIEAQDVIPGDRNRLPEVFVKAQMGSQVLKTKICPTRTTTPLWNEDLVFVAAEPFEEKLTITVEDRVHPSKDEVLGKIILPLTLFEKRLDHRPVHSRWFNLEKFGFGVMEADRRNELKFSSRIHLRICLEGGYHVLDESTLYSSDQRPTSRQLWKEPIGVIEVGILGAQGLLPMKMRDGHGSTDAYCVAKYGQKWVRTRTILDTYSPKWNEQYTWEVYDPCSVITLGVFDNCHLGGSEKATPDTAARDTRIGKVRIRLSTLEASRIYTHSYPLLVLHPHGVKKMGELQLAVRFTSLSLANMIYIYGQPLLPKMHYLRPFTVNQIESLRYQAMNIVAGRLGRAEPPLRREVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGIISMGQWFSQVCHWKSPVTSILVHILFLILICYPELILPTLFLYMFLIGLWNYRFRPRNPPHMDTKLSWAEALHPDELDEEFDTFPTSRPHDVVRMRYDKLRSVAGRIQTVVGDIATQGERFHSLLSWRDTRATSLFVVFSLCSAVVLYATPPKVVAMVTGLYYLRHPKFRSKLPSVPSNFFKRLPARTDSML 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g01827 806 Gene3D C2 domain 374 530 IPR035892 -
Spst5g01827 806 Gene3D C2 domain 216 362 IPR035892 -
Spst5g01827 806 Gene3D C2 domain 59 191 IPR035892 -
Spst5g01827 806 CDD C2C_MCTP_PRT_plant 229 381 IPR047258 -
Spst5g01827 806 CDD C2D_MCTP_PRT_plant 393 523 IPR047255 -
Spst5g01827 806 MobiDBLite consensus disorder prediction 1 47 - -
Spst5g01827 806 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 71 206 IPR035892 -
Spst5g01827 806 FunFam C2 domain-containing protein 375 530 - -
Spst5g01827 806 Pfam Plant phosphoribosyltransferase C-terminal 651 806 IPR013583 -
Spst5g01827 806 FunFam C2 domain-containing protein 66 207 - -
Spst5g01827 806 SMART C2_3c 71 168 IPR000008 -
Spst5g01827 806 SMART C2_3c 393 503 IPR000008 -
Spst5g01827 806 SMART C2_3c 229 329 IPR000008 -
Spst5g01827 806 ProSiteProfiles C2 domain profile. 53 174 IPR000008 -
Spst5g01827 806 Pfam C2 domain 228 334 IPR000008 -
Spst5g01827 806 Pfam C2 domain 393 506 IPR000008 -
Spst5g01827 806 Pfam C2 domain 71 175 IPR000008 -
Spst5g01827 806 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 228 383 IPR035892 -
Spst5g01827 806 ProSiteProfiles C2 domain profile. 375 504 IPR000008 -
Spst5g01827 806 FunFam C2 domain-containing protein 215 362 - -
Spst5g01827 806 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 22 806 IPR047259 -
Spst5g01827 806 ProSiteProfiles C2 domain profile. 209 332 IPR000008 -
Spst5g01827 806 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 392 528 IPR035892 -
Spst5g01827 806 CDD C2B_MCTP_PRT_plant 71 192 IPR047257 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g01827 Spst-Chr5 54013011 54015431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g01827 25 806 Lipid Metabolism Gene Families AT5G06850 72.693 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g01827 - - gmx:100785340 1534.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03324 1 41884918 41887245 Spst5g01827 5 54013011 54015431 ECH
Spst7g00271 7 2067644 2069968 Spst5g01827 5 54013011 54015431 ECH
Spst10g01683 10 17251559 17255046 Spst5g01827 5 54013011 54015431 ECH
Spst5g01827 5 54013011 54015431 Spst5g01827 5 54013011 54015431 ECH