Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03324 ATGCAGCGGCCTCCACCAGAAGATTTTCTGTTGAAGGAGACCAAGCCCCACCTTGGAGGGGGGAAGGTCTCTGGTGACAAGCTTACTAGCACTTATGACCTTGTTGAGCAAATGCAGTACCTCTATGTGAGGGTTGTGAAGGCTAAGGACTTACCTGCAAAGGATGTCACTGGCAGTTGTGACCCTTATACTGAAGTCAAGTTGGGGAACTACAAAGGCACCACTCGACATTTCGAGAAGAAGAGTAATCCTGAATGGAACCAGGTTTTTGCTTTCTCCAAAGACCGCATTCAGGCTTCCATTCTGGAGGTCACTGTGAAGGATAAGGATGTTGTGAAGGATGATTTCATCGGTCGGGTCTTGTTCGACCTCAATGAGGTTCCAAAACGTGTTCCACCGGATAGTCCCCTTGCACCGCAGTGGTATAGGCTGGAGGACAGGAAGGGTGATAAGGCGAAGGGGGAGCTAATGCTGGCTGTTTGGATGGGTACACAAGCTGATGAAGCATTTCCGGAAGCATGGCACTCTGACGCTGCGACGGTTAGTGGGACTGACGCTCTTGCGAACATTAGATCAAAGGTGTATCTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATAGAGGCGCAAGACTTGCAGCCGACTGACAAGGGTAGATACCCTGAAGTTTTTGTGAAGGCTACTCTGGGAAATCAGACCTTGAGGACTAGAATCTCCCAAAGCAGGACTATCAATCCAATGTGGAATGAGGATATGATGTTTGTGGCCGCTGAACCATTTGAGGAGCCTCTGATTTTGAGTGTGGAAGACAGGGTTGCCCCTAACAAAGAGGAATCACTTGGGAGGTGTGCAATTCCTTTACAAATGGTGGACCGGAGACTGGATTACAAACCTGTGAATACTAAGTGGTATAATATTGAAAAGCACATTGTTATTATGGAAGGAGAAAAGAAGAAGGAAATAAAGTTTTCTAGCAAGATTCATATGAGGATCTGTCTTGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACTGCGAAACAGCTGTGGAAGTCCAGTATTGGAGTTCTTGAATTGGGGATATTGAATGCTCAGGGTTTGATGCCAATGAAAACAAAAGATTCTAAGGGGACAACTGATGCCTATTGTGTAGCAAAATATGGGCAGAAGTGGGTCCGGACAAGGACAATCATTGATAGCTTTGCACCCCGATGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATTACAATTGGTGTCTTTGATAACTGTCATTTGATTGGTGGTGATAAGGCTGGAGGGGCAAAAGATTCCAAAATTGGGAAGGTAAGAATCCGTCTTTCCACCCTTGAGACTGACCGGGTCTATACACATTCCTATCCTCTTCTAGTTCTTCATTCAAATGGGGTGAAGAAAATGGGTGAAATCCACTTGGCTGTAAGGTTTACTTGTTCTTCTCTGCTTAATATGATGCATATGTATTCAATGCCTTTGTTGCCTAAGATGCATTATATTCACCCACTAACTGTTAGCCAGCTTGACAATTTGAGGCATCAAGCTACTCAGATTGTTTCAATGAGACTGAGTCGTGCTGAGCCACCCTTGAGAAAGGAAATTGTGGAATATATGCTGGATGTGAGTTCCCACATGTGGAGCATGAGAAGAAGCAAGGCCAACTTTTTCAGGATTATGGGAGTTTTGAGTGGACTAATTGCTGTAGGAAAGTGGTTTGACCAGATCTGTAATTGGAAAAATCCAATCACCACAGTTCTGATCCATATCCTGTTTATAATATTGGTCATGTACCCTGAGCTTATCTTACCTACAATATTCCTTTACCTCTTCTTGATTGGAGTTTGGTACTATAGATGGAGGCCAAGACACCCTCCTCACATGGACACTCGTCTCTCTCATGCCGATTCTGCGCACCCAGATGAACTCGATGAAGAGTTTGACACATTCCCGACCACCAGACATTCGGACATCGTGAGGATGAGGTACGACCGGCTTAGAAGCATTGCTGGGAGGATACAGACTGTGGTTGGTGATTTGGCCACTCAAGGGGAGAGGCTGCAGTCTTTGCTCAGCTGGAGGGATCCAAGAGCAACTGCCCTCTTTGTGATCTTCTGTCTGGTTGCTGCCATTGTACTCTATGTCACTCCATTCCAGGTTGTGGCACTTCTCACTGGAATCTATGTATTGAGACACCCCAGGTTCCGCCACAAGCTTCCTTCAGTGCCTCTGAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA 2328 0.4558 MQRPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYTEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVKDDFIGRVLFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKATLGNQTLRTRISQSRTINPMWNEDMMFVAAEPFEEPLILSVEDRVAPNKEESLGRCAIPLQMVDRRLDYKPVNTKWYNIEKHIVIMEGEKKKEIKFSSKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDSKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLIGGDKAGGAKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHSNGVKKMGEIHLAVRFTCSSLLNMMHMYSMPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLSRAEPPLRKEIVEYMLDVSSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRHSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03324 775 Gene3D C2 domain 340 497 IPR035892 -
Spst1g03324 775 MobiDBLite consensus disorder prediction 1 15 - -
Spst1g03324 775 Pfam C2 domain 365 475 IPR000008 -
Spst1g03324 775 Pfam C2 domain 40 142 IPR000008 -
Spst1g03324 775 Pfam C2 domain 201 307 IPR000008 -
Spst1g03324 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 177 IPR035892 -
Spst1g03324 775 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Spst1g03324 775 CDD C2D_MCTP_PRT_plant 365 492 IPR047255 -
Spst1g03324 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 355 IPR035892 -
Spst1g03324 775 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 6 775 IPR047259 -
Spst1g03324 775 Pfam Plant phosphoribosyltransferase C-terminal 620 775 IPR013583 -
Spst1g03324 775 ProSiteProfiles C2 domain profile. 347 473 IPR000008 -
Spst1g03324 775 FunFam C2 domain-containing protein 35 179 - -
Spst1g03324 775 FunFam C2 domain-containing protein 188 334 - -
Spst1g03324 775 SMART C2_3c 40 136 IPR000008 -
Spst1g03324 775 SMART C2_3c 202 300 IPR000008 -
Spst1g03324 775 SMART C2_3c 365 472 IPR000008 -
Spst1g03324 775 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g03324 775 Gene3D C2 domain 24 162 IPR035892 -
Spst1g03324 775 Gene3D C2 domain 188 333 IPR035892 -
Spst1g03324 775 CDD C2B_MCTP_PRT_plant 40 164 IPR047257 -
Spst1g03324 775 CDD C2C_MCTP_PRT_plant 202 353 IPR047258 -
Spst1g03324 775 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Spst1g03324 775 FunFam C2 domain-containing protein 347 499 - -
Spst1g03324 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 506 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03324 Spst-Chr1 41884918 41887245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03324 1 775 Lipid Metabolism Gene Families AT3G57880 90.710 0.0 1486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03324 - - gmx:100800242 1533.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03324 1 41884918 41887245 Spst5g01827 5 54013011 54015431 ECH
Spst1g03324 1 41884918 41887245 Spst1g03324 1 41884918 41887245 ECH
Spst1g03324 1 41884918 41887245 Spst7g00271 7 2067644 2069968 PCT