Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00990 ATGATTGAAGGTGAATTTGAGGAATCGTTGATTATTTTGTTGTGGTTAGGATCTATTTTGGTGTATTTGGTGATGGGGATGAGGAATGATGCACAGAAGCAACAGCTTCTTCATCAGGGTAATGGTGGTGGCAAAACCAACGGCTTCATTCCTAGTTCTTTTCGTGCTCTTTCAAGCTACCTCAGGATTGTTTCTTCTGGTGCTTCTACTGTTGCACGTTCTGCTGCATCTGTAGCTTCATCCATTGTGGAGAGGGATGATGTCCCCGACCATGATCAGGTTATCTGGGCTGGGTTTGACAAGTTAGAGGGTGAGGGTGAAGTAATTCAGAAAGTACTTCTTCTAGGCTATCGATCTGGCTTCCAGGTTTGGCATGTTGATGAATCAAATAATGTCCGAGACCTTGTATCCCGACATGATGGTCCTGTTTCTTTTATGCAAATGGTACCTAATCCCATTGCATCAAAGAGATCTGAAGACAATTATGCAAACAGCCGCCAGCTGTTGGTTGTATGTACTGATGGGTTCTTTGCTGGAGGTAGTATTGTTCAGGATGGGTTGGCCACCCCTAATAATGGGAACACCATAAACTTACATGACCAAATGAATGGAAACTATCTGCCAACTACTGTTCGGTTTTATTCTATGAAATCCCAATCATATGTTCATGTGCTGAAATTTAGATCAGTTGTTTATTCTGTGAGGTGCAGTTCTCGAGTAGTTGCAGTGTCTCAGTCCTCACAGATTCACTGTTTTGATGCCACCACATTAATAAGGGCATACATTTTACTCACGAATCCTATATCCATGAGTGTCCCTGGTTCTGGAGGCATAGGTTATGGACCACTTGCGGTGGGACCAAGATGGTTGGCTTATAGTGGAAGTGCAGTTGCTGTCTCCAATTCAGGACATGTCAGCGCAAAACATTTGACGCCTTCTGCAAGCTTTTCTGGTTTTTCTTATAATGGGAATTTGATTGCCCACTATGCCAAAGAGTCCAGCAAGCATCTTGCTACCGGTATTGTAACCCTTGGCGACATGGGGTATAAGAAACTTTCCAGATACTGCTCTGATACCAATGGCTCATTACAATCTGTAAACTCTGGCTATAAAAGCAATGGAACCATTAATGGTCATTCAACAGATGCAGATAACATTGGAATGGTTATTGTAAAAGATATTGTCTCCAGAAACGTTATTGCTCAATTCCGGGCCCACAAGAGTCCAATTTCAGCATTATGCTTTGATCCTAGTGGCACCATTTTAGTGACAGCTTCCATTCAGGGTCATAACATAAATGTTTTCAAGATAATGCCTGTTCGGGAGAATTTGTCACCTTCTGACACTGGCCCTTCTTATTTTCATTTGTACAAGCTGCAACGTGGCTTTACAAATGCGGTTATTCAAGATATCAGTTTCAGTGATGACAGCAAGTGGATTATGATCAGTTCCTGCAGGGGCACTAGCCATCTATTTGCCATAAATCCTCAAGGAGGACATGTAAATATTCAATCCTTGGATGATAGTTTTATGGCAAAAAATAGTGGATTAGGCACTACAGCTAATCACGCCCTGGGCTGGTCTCATAGTTCAACCATGCAAAGGCCTAAAAGGCATAGTTTGGTTGTGGCTGGCCCTCCAATCACTCTTTCTGTGGTAAGCCGGATCAGGAATGGAGCTAATGGCTGGAGAGGCACTGTAAGTGGCGCTGCTGCTGCTGCAACTGGTAGGAAAATTTCCCTTTCTGCGGCTATTGCTTCATCTTTTTGCAAGAATAAAAGCTCTGACGGGAACTATTCAAAGTCAAAGTATCGCCTGTTGGTCTTTTCACCTACTGGTTCTATGATACAATATGCTCTACGGATGTTAACTGGTCAAGATTCACCTCTTGTTTCTGGATTGGCTCCTGCTTATGAATCCATTCCACAGGATGATGCAAGATTAGTAGTTGAGGCTATCCAAAAATGGAATATATGTCAAAGTCATAGTCGGAGAGAGCGAGATGATAATTTAGACATATATGGTGAGAATGGAATTTCCGATGTTAATAAAATATATCCAGAGGAAGTGGGGGAAAACACCTCTAGCCCGAAAATCGGGAATGGCGTCACGAAAGTGAATCCCTCTCTTGAGGATAAGCATCATTTGTATATTTCAGAAGCTGAACTTCATATGCATCAAGCTCAGACTTCATTATGGGCCAAACCAGAGATATATTTTCATTCGATGTTGCAAGAGCCTGACATAATGGGGGAAGAAGCTGCATCAGGAGGTGAATTTGAGATTGAAAGAATGTCAACTTGCATAATTGAAGCTAGATCAAAAGACTTGGTTCCAATTACTGACTGTATTCAGACTCCAAAGTTAAACGATACAAGGATTTCTTCTATGGATATCAAGAAAGATGAAGAACTGTCGTCGCATCACAGTTTGCGCCCATCTGGAAATGGTAGGGTTTCATGTAGGACTGGTGGTGATGCTGATTCTGAGTGCAGAAGTGGGAATGCAGGAACTGAGTGGGATAATCATGTGGTGCCTTCTGAAACTGTGAGCTTTGTAAATAACAATGACAACTTTAAACCAAATACTCCGCATGAGATTGTAAATAATAGAAGGGAGCACTTAAACACAGAGGCTCAACTCATGTTTGTAAATAGTGACAGAAAGCTTGAAAATGAAGAATCATTTTGA 2691 0.4188 MIEGEFEESLIILLWLGSILVYLVMGMRNDAQKQQLLHQGNGGGKTNGFIPSSFRALSSYLRIVSSGASTVARSAASVASSIVERDDVPDHDQVIWAGFDKLEGEGEVIQKVLLLGYRSGFQVWHVDESNNVRDLVSRHDGPVSFMQMVPNPIASKRSEDNYANSRQLLVVCTDGFFAGGSIVQDGLATPNNGNTINLHDQMNGNYLPTTVRFYSMKSQSYVHVLKFRSVVYSVRCSSRVVAVSQSSQIHCFDATTLIRAYILLTNPISMSVPGSGGIGYGPLAVGPRWLAYSGSAVAVSNSGHVSAKHLTPSASFSGFSYNGNLIAHYAKESSKHLATGIVTLGDMGYKKLSRYCSDTNGSLQSVNSGYKSNGTINGHSTDADNIGMVIVKDIVSRNVIAQFRAHKSPISALCFDPSGTILVTASIQGHNINVFKIMPVRENLSPSDTGPSYFHLYKLQRGFTNAVIQDISFSDDSKWIMISSCRGTSHLFAINPQGGHVNIQSLDDSFMAKNSGLGTTANHALGWSHSSTMQRPKRHSLVVAGPPITLSVVSRIRNGANGWRGTVSGAAAAATGRKISLSAAIASSFCKNKSSDGNYSKSKYRLLVFSPTGSMIQYALRMLTGQDSPLVSGLAPAYESIPQDDARLVVEAIQKWNICQSHSRRERDDNLDIYGENGISDVNKIYPEEVGENTSSPKIGNGVTKVNPSLEDKHHLYISEAELHMHQAQTSLWAKPEIYFHSMLQEPDIMGEEAASGGEFEIERMSTCIIEARSKDLVPITDCIQTPKLNDTRISSMDIKKDEELSSHHSLRPSGNGRVSCRTGGDADSECRSGNAGTEWDNHVVPSETVSFVNNNDNFKPNTPHEIVNNRREHLNTEAQLMFVNSDRKLENEESF 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00990 896 Pfam Breast carcinoma amplified sequence 3 545 779 IPR022175 -
Spst5g00990 896 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 43 833 IPR045142 GO:0006914
Spst5g00990 896 FunFam Breast carcinoma-amplified sequence 3 319 545 - -
Spst5g00990 896 SMART WD40_4 218 253 IPR001680 GO:0005515
Spst5g00990 896 SMART WD40_4 452 493 IPR001680 GO:0005515
Spst5g00990 896 SMART WD40_4 396 436 IPR001680 GO:0005515
Spst5g00990 896 Gene3D - 110 533 IPR015943 GO:0005515
Spst5g00990 896 MobiDBLite consensus disorder prediction 803 842 - -
Spst5g00990 896 SUPERFAMILY WD40 repeat-like 112 495 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00990 Spst-Chr5 9592479 9597309 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00990 - - gmx:100784596 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00990 5 9592479 9597309 Spst5g00990 5 9592479 9597309 ECH
Spst5g00990 5 9592479 9597309 Spst11g00779 11 31524373 31537973 PCT