Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00988 ATGGAGTCAATACTGGGTCGTGCTCTGGAGTACACTCTCAAGTACTGGCTCAAGTCCTTCTCCCGGGAACAGTTCAAGTTGCAGGGCCGCACCGTTCACCTCTCCAATTTAGATATCGACGGCGACGCCTTGCATTCCAGTGTCGGATTGCCGCCGGCGCTGAACGTTGCCACCGCCAAAGTCGGCAAACTAGAGATAACACTTCCGTCTGTGAGCAATGTGCAAACGGAGCCAATCGTCGTGCATATTGATAGACTCGATCTGGTTCTCGAAGAGAATTCTGATTTTGATGCATCGCTTAGTTCGAACTGTTCCACGCCGTCGGCTGCCTCTGCCAAGGGAAGTGGTTATGGTTTTGCTGATAAGATTGCAGATGGCATGACTATACAAATTCAAACAGTTAATCTATTACTTGAAACTTGTGGTAGTTCTCGTCGTCAAGGGGGAGCAACATGGGCACCACCTATGGCATCTATCACCATACGTAACCTTTTGTTGTATACCACAAATGAAAACTGGCAGGTTGTAAATCTTAAGGAAGCACGGGAATTCTCAAGTAACAAGAAATACATATATGTCTTCAAAAAACTGGAATGGCAATCTTTGTCTATTGATCTTTTACCTCATCCCGACATGTTCACAGAAGCAACATTAGACCACTCTGAAGGGGGATCAAACTTTAGGGATGATGATGGCGCAAAGCGTGTATTCTTTGGCGGAGAGCGATTTATAGAAGGAATATCTGGAGAAGCATATATCACAATTCAGAGAACTGAATTGAATAGTCCCCTTGGGCTTGAAGTTCAATTGCACATCAATGAAGCTGTTTGCCCTGCATTAAGCGAACCGGGACTGCGGGCACTTCTCCGCTTTATGACGGGAGTATATGTATGTCTAAACAGGGGTGATGTTGATTCCAAGCGATCCACTGAAGCAGCTGGACGATCTCTTGTCTCAATTGTTGTAGATCATATATTTCTGTGTATTAAAGATACTGAATTCCAGCTTGAGCTTTTGATGCAGTCCCTCTTTTTTTCTCGGGCCAGTCTTTCCGAAGGAGATAATGATAATAACTTGACTAGAATTACAATTGGTGGCTTATTTTTAAGGGATACCTTTTGTTGCCCTCCATGTATCTTAGTGCAACCATCAATGCAAGCTGGCACGAGAGACACTTTCCATGTGCCAGAATTCGCCAGAAGCTTTTGCCCTCCTATATATCCTCTACAAGAACAACAGTGGCAATTGATTGAGGGAACCCCTCTGATATGCCTCCATGCTCTTAAGATCATGCCTTCTCCACTTCCACCATCCTTTGCTTCTGAAACTGTTATTGACTGTCAGCCTCTTGTGATTCACCTCCAGGAAGAATCATGCCTGAGGATATCCTCTTTATTAGCTGACGGTATTGTTGTCAATCCTGGTGATATTTTACCAGATTTCTCAGTGAAATCTTTTATTTTCAATCTCAAGGGACTGGCTCTTACTGTTCCTTTTGACAAGACCAAATTGGATATTTCCAAACATGACATGGACAATACAGTCCAGACCTCCTTTGCTGGAGCAAGGCTTCATATTGAAAGCCTTTTCTTTTTAAATTCACCCTTGCTGAAACTGAGAATGCTAAACCTGGAAAAGGATCCTGCTTGCTTCAGTCTTTGGGAAGGTCAACCAATTGATGCTAGCCAGGAGAAATGGACTGCTAGAGCATCGCAGCTTACTTTGTCTCTGGAAGCATGTACTGACGGACCTGGATCTCAAAATTCCCTTGGACAAACGACAGGATTGTGGAGATGTGTTGATCTGAAAGATGTTTGCATTGAAGTAGCAATGGTAACTGCTGATGGCAGTCCCTTGTTACAAGTTCCCCCACCTGGGGGTATTGTCAGGGTTGGAGTTGCTTGTGAACAGTATCTGTCCAACACTTCTGTGGAACAATTGTTTTTTGTTCTGGATCTATATGCTTATTTTGGGAGAGTTAGTGAAAAGATAGCAGTGGCTGGAAAAAGGAAGAAGTTGGAGGACATTAGGGACAAATCCATTAGTGGAAAGCTGATGGACAAGGTTCCTAGCGATGCTGCTGTGAGTTTATCAGTGAAAAATCTCCAACTTCGATTTCTGGAGTCATCTTCTGTGAATATTGAGGGGATGCCTTTAGTGCAGTTTGTTGGAGATGATCTATTTACCAGTGCCACTCACAGAACCCTTGGAGGGGCTATTATTGTTTCGTCTATTTTACGTTGGGAGAGTGTTGAGATAGGTTGTGTAGATGCTGAGGGGCGCTTGCCATGTGAAAATGGCTCATTCTTATGTGCTAAGGAAAATGCTCCCTCACTGAGTGACAATGGATATCCTCATCTAAGAACTGTTTTTTGGGTGCATAAGAACGAGAAACAGAATGGAAATGCTCATTCTGTCCCTTTTCTTGACATAAGCATGGTTCATGTAATACCATTATATGAACAAGACTTGGAATCTCATAGTTTAAATGTCTCAGCTTCTGTATCTGGTGTTCGTCTTGGTGGAGGAATGAACTATGCTGAAGCCCTCCTGCATAGATTTGGAATACTTGCGCCTGATGGAGCTCCTGGGATGGGTCTTTGTAAAGGGTTGGAAAACTTACAGAAAGGACCACTGTCAAAACTTTTTAAGGCTACTCCTCTCATTGTAAACGACTCAGAAAATGTTGGAAGTATGAGAGAAGGTAAAGAAACCACATTTCCCCAATTGAAGAAGCCTGATGATGTGGATGTAACTGTAGAATTGAGAGACTGGTTATTTGCCCTTGAAGATACACAAGAGACAGCTGAAAGATGGTGGTTCTCCAGCCATGAAGATGAAGACAGAGAAGAGAGGAGTTGGCATGCATCTTTCCATGGTTTACGAGTAAATGCAAAAAGTAGCCCGCCAAATGTTCCTGATGGAAAAGCACATGTGCAAAGAATAAAACAACATCCAGTAGAACTGATTACGGTTGGAATTCAAGGTCTGCAAATCTTGAAGCCTCATTTACAAAAGGACATTCCTTCATCAATGCTTATTGCAAACGGGGGTGAAGAATTCACTGACACAGTTGGAGGAATTGGTGTTGAAGTTCGCTTGATTTTAGATGGGGAGAATGGCGATGATGAAATGGCTAATTGGGAAGTGGAAAACCTAAAATTCTCTGTTAAACAACCGATTGAGGCAGTAGTAACCAAGGATGAGGTTCAGCACCTCACTTTTCTGTGCAAATCTGAAATTGACTCAATTGGCCGGATAACAGCTGGAATTATAAGGTTGCTGAAGCTAGAAGGTTCTGTTGGTCAGTCTGTAATAGATCAACTTGGGCACCTAGGAAGTGAAGGCATTGATAAGATTTTCTCTTCAGAAAAGGCTAGCAGAGACGGTAGTATTGGTAGTAGGGGAAATTCTCCACTGCCAAATCTCATAAATGAGGAATCACACAGAAAATCGGAACAAACATTAACTTTGCTTGAGGAAGCACTTGTGGAATCACAGGCTAAACTTAATGATTTAATGAGTGATATTGGTACTTCAGAATCTTCCTCTCAACACCTTATCATTGTCCAACTCAGTCAAAAGATAGAGACTATGAACCACTTATTCATGCGATTACGGAATCAACTTTAA 3633 0.4266 MESILGRALEYTLKYWLKSFSREQFKLQGRTVHLSNLDIDGDALHSSVGLPPALNVATAKVGKLEITLPSVSNVQTEPIVVHIDRLDLVLEENSDFDASLSSNCSTPSAASAKGSGYGFADKIADGMTIQIQTVNLLLETCGSSRRQGGATWAPPMASITIRNLLLYTTNENWQVVNLKEAREFSSNKKYIYVFKKLEWQSLSIDLLPHPDMFTEATLDHSEGGSNFRDDDGAKRVFFGGERFIEGISGEAYITIQRTELNSPLGLEVQLHINEAVCPALSEPGLRALLRFMTGVYVCLNRGDVDSKRSTEAAGRSLVSIVVDHIFLCIKDTEFQLELLMQSLFFSRASLSEGDNDNNLTRITIGGLFLRDTFCCPPCILVQPSMQAGTRDTFHVPEFARSFCPPIYPLQEQQWQLIEGTPLICLHALKIMPSPLPPSFASETVIDCQPLVIHLQEESCLRISSLLADGIVVNPGDILPDFSVKSFIFNLKGLALTVPFDKTKLDISKHDMDNTVQTSFAGARLHIESLFFLNSPLLKLRMLNLEKDPACFSLWEGQPIDASQEKWTARASQLTLSLEACTDGPGSQNSLGQTTGLWRCVDLKDVCIEVAMVTADGSPLLQVPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYAYFGRVSEKIAVAGKRKKLEDIRDKSISGKLMDKVPSDAAVSLSVKNLQLRFLESSSVNIEGMPLVQFVGDDLFTSATHRTLGGAIIVSSILRWESVEIGCVDAEGRLPCENGSFLCAKENAPSLSDNGYPHLRTVFWVHKNEKQNGNAHSVPFLDISMVHVIPLYEQDLESHSLNVSASVSGVRLGGGMNYAEALLHRFGILAPDGAPGMGLCKGLENLQKGPLSKLFKATPLIVNDSENVGSMREGKETTFPQLKKPDDVDVTVELRDWLFALEDTQETAERWWFSSHEDEDREERSWHASFHGLRVNAKSSPPNVPDGKAHVQRIKQHPVELITVGIQGLQILKPHLQKDIPSSMLIANGGEEFTDTVGGIGVEVRLILDGENGDDEMANWEVENLKFSVKQPIEAVVTKDEVQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVIDQLGHLGSEGIDKIFSSEKASRDGSIGSRGNSPLPNLINEESHRKSEQTLTLLEEALVESQAKLNDLMSDIGTSESSSQHLIIVQLSQKIETMNHLFMRLRNQL 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00988 1210 Coils Coil 1189 1209 - -
Spst5g00988 1210 MobiDBLite consensus disorder prediction 1125 1144 - -
Spst5g00988 1210 PANTHER UNCHARACTERIZED 1 1208 IPR026728 -
Spst5g00988 1210 MobiDBLite consensus disorder prediction 1127 1144 - -
Spst5g00988 1210 Pfam N-terminal region of Chorein or VPS13 1 98 IPR026854 -
Spst5g00988 1210 Coils Coil 1156 1176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00988 Spst-Chr5 9554046 9562862 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00988 - - gmx:100811661 2187.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00988 5 9554046 9562862 Spst5g00988 5 9554046 9562862 ECH
Spst5g00988 5 9554046 9562862 Spst11g00780 11 31554966 31574149 PCT