Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00911 ATGGGTGCCGACGAAGACTACGACTACTTGTTCAAGCTCGTCCTCATCGGTGACTCTGCCGTCGGAAAGTCCAACCTCTTGTCCCGATTCACCCGAAACGAGTTTAGCTTGGAGACCAAATCCACCATCGGCGTCGAATTTGCCACCCGCAGCGTCCCCATCGATAGCAAGCTTGTCAAGGCACAAATCTGGGACACCGCAGGCCAAGAAAGATATCGTGCTATTACAAGTGCATATTACCGAGGAGCAGTTGGTGCTTTGGTTGTGTACGATGTAACCCGACACGTGACGTTTGAGAACGTGGAGAGATGGTTGAAGGAGCTTCGAGATCACACAGAAGCATATGTTGTGGTCATGCTGGTGGGAAACAAGGCAGATCTTCGACATTTGCGTGCAGTGTCAACTGAAGAAGCCACAGAATTTGCAGAGAAAGAGAAGATATACTTCATGGAAACCTCTGCCCTTGAGTCCCTGAACGTGGACAATGCTTTCATAGAAGTGCTGACTCAGATATACAACGTTGTGAGCAGGAAAACTCTTGAGACAGTGGATGACCCTCCTGCAGGATCCCTGCCCAAAGGGGAAACCATCGTTGTTGGAACCAAAGATGATGTCTCAGCCGTTAAAAAGAGTGGATGCTGTTCCACATAG 651 0.4931 MGADEDYDYLFKLVLIGDSAVGKSNLLSRFTRNEFSLETKSTIGVEFATRSVPIDSKLVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTEAYVVVMLVGNKADLRHLRAVSTEEATEFAEKEKIYFMETSALESLNVDNAFIEVLTQIYNVVSRKTLETVDDPPAGSLPKGETIVVGTKDDVSAVKKSGCCST 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00911 216 Pfam Ras family 12 172 IPR001806 GO:0003924|GO:0005525
Spst5g00911 216 Gene3D - 3 214 IPR027417 -
Spst5g00911 216 ProSiteProfiles small GTPase Ras family profile. 5 216 IPR001806 GO:0003924|GO:0005525
Spst5g00911 216 ProSiteProfiles small GTPase Rab1 family profile. 6 214 - -
Spst5g00911 216 CDD Rab11_like 8 172 - -
Spst5g00911 216 PANTHER DRAB11-RELATED 4 197 - -
Spst5g00911 216 SMART rab_sub_5 11 174 - -
Spst5g00911 216 NCBIfam small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Spst5g00911 216 FunFam ras-related protein RABA1f 3 214 - -
Spst5g00911 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 180 IPR027417 -
Spst5g00911 216 PRINTS Transforming protein P21 ras signature 11 32 - -
Spst5g00911 216 PRINTS Transforming protein P21 ras signature 114 127 - -
Spst5g00911 216 PRINTS Transforming protein P21 ras signature 149 171 - -
Spst5g00911 216 PRINTS Transforming protein P21 ras signature 52 74 - -
Spst5g00911 216 PRINTS Transforming protein P21 ras signature 34 50 - -
Spst5g00911 216 ProSiteProfiles small GTPase Rho family profile. 4 172 - -
Spst5g00911 216 SMART rho_sub_3 13 174 IPR001806 GO:0003924|GO:0005525
Spst5g00911 216 SMART ras_sub_4 8 174 - -
Spst5g00911 216 SMART ran_sub_2 16 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00911 Spst-Chr5 8503308 8505079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00911 K07904 - gmx:100305599 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00911 5 8503308 8505079 Spst5g00911 5 8503308 8505079 ECH
Spst5g00911 5 8503308 8505079 Spst11g00872 11 32784662 32785111 ECH