Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00840 ATGGCTTGCTGTCAGTATGCACTCATTCCTCCTCCTTCGGATTTGATGAGAAGAGAGATGAAGGATGCCCTAGCACCGTTTTTGGCAAGTATCAATTGGTTACCTATCTCCGTGTTTGGCATGAGTAACTACGATACCAACCCCTTCGCGGAAGACGATGTTAATCCCTTCGCCGATGGAGGGCAATCAAATCGTGGTGGTGGTGCATTCTATAATACGAATTCAGGGCGTGCTTCTGCAACCTCAAAGCTTTCACCCCTGTCCCCTGAGCCTTATGATCGTGCAGCAACTGTTGACATTCCTATCGGTTCCTCAATTGACCTTAGAGCTAAGGAAAAGGAACTGCAAGCTAGAGAGGCTGAGCTGAAAAGAAGGGAACAGGAGCTAAAACGAAAGGAAGATGCTCTTGCACGAGCTGGAATAGTAATAGAGGAGAAAAATTGGCCACCTATTTTCCCCGTAATTCATCACGACATTGCAAAAGAAATACCAATACATCTTCAATCAATCCAGTATGTTGCATTTACAACATGGTTGGGTTTGATTGTATGTCTTTTATGGAATATGGTAGCAGTTACTGTAGCTTGGGTCAAAGGAGAAGGTCTTTCAATCTGGTTTCTAGCTATCATATACTTTATTTCCGGTGTTCCAGCATCCTATGTTACGTGGTATCGCCCTCTTTATCGTGCTACAAGGACGGACAGTGCTCTAAAGTTTAGCTGGTTTTTCTTGTGTTACGCGGTACACATTCTCTTCTGCGTTCTTGCTGCAATTGCTCCTCCAATTTTCTTCAAAGGGAAATCTCTCACAGGCATTCTACCTGCGTTTGAGGTATTGGACGACAATACAATGGTTGGGCAAGTATATATGTACTTTAGGGGCAGTGGAAAGGCTGCAGAAATGAGGCGTGAGGCTGCAAAAGGAGCAATGAGGGCAGCTCTATGA 945 0.4466 MACCQYALIPPPSDLMRREMKDALAPFLASINWLPISVFGMSNYDTNPFAEDDVNPFADGGQSNRGGGAFYNTNSGRASATSKLSPLSPEPYDRAATVDIPIGSSIDLRAKEKELQAREAELKRREQELKRKEDALARAGIVIEEKNWPPIFPVIHHDIAKEIPIHLQSIQYVAFTTWLGLIVCLLWNMVAVTVAWVKGEGLSIWFLAIIYFISGVPASYVTWYRPLYRATRTDSALKFSWFFLCYAVHILFCVLAAIAPPIFFKGKSLTGILPAFEVLDDNTMVGQVYMYFRGSGKAAEMRREAAKGAMRAAL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00840 314 Coils Coil 105 139 - -
Spst5g00840 314 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 46 289 IPR007273 GO:0015031|GO:0016020
Spst5g00840 314 Pfam SCAMP family 145 290 IPR007273 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00840 Spst-Chr5 7718376 7727493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00840 42 314 Miscellaneous Gene Families AT1G11180 58.983 1.39e-119 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00840 K19995 - gmx:100812020 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00840 5 7718376 7727493 Spst11g01024 11 34437221 34443836 PCT