Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00782 ATGTTTGAAGGGATGGGGGGACCCAACGGGCAGAGGGGGAAAGCACGAGAATTTTATGCTCTTACAGCCGGTGACAACTGTAGAATTAAGACCCTCCAGCTGGATTTGTCCACTTGGCGACACTCTATTGGGGGAGATCTGGCATCATTCTTTTTAGAAGCAGTGGTACTACCCACTTCTTTTGAACAGCTTTTGCCAGCTATCACTGCCACAGCATCTCTCGTGCGCCCTCACAGAGAAAGCATTGCATTGGGGGAGTGGAAGCATAAGCTTCACCTCACTCTGTTCACTTCTCAGTTCAGCTGCATAGATTCTATGTTGGGACTGTTTCTTGGTCTTTTGTTCGTGGGGTTGGCTGCCTCTGCCAAGTTTGATGAACTCTTCCAACCCAGTTGGGCCATGGACCATTTCATCCATGAAGGAGAATTACTCAAACTCAAACTTGATAACTATTCTGGTGCTGGATTTGGATCCAAGAGCAAGTACATGTTTGGAAAAGTGACCATCGAGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACCGTTACAGCTTTCTATATGTCATCAGATGGTCCAACTCACAACGAATTTGATTTCGAGTTTCTGGGCAACACCACTGGAGAACCTTACTCGGTCCAAACGAACGTGTATGTGAACGGGGTTGGTAACAGGGAGCAGAGACTCAACCTTTGGTTCGACCCTACCAAGGACTTCCACACCTATTCCATCTTCTGGAACCAGCGCCAAGTTGTATTCGAAGTGGATGGGACGCCAATAAGGGTGCATACAAATCTGGAACACAAAGGAATTCCGTTCCCAAAGGACCAAGCCATGGGTGTGTACAGTTCAATATGGAACGCAGATGACTGGGCCACCCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCTTTCATGGCCACCTACAGGGACTTCCAGATCGACGCGTGCGAGTGCCCCGTGCCAGTGACGTCAGCGGATACAGCCAAGAAATGTAGCAGCAGTGAAGATAAGAAATATTGGTGGGATGAACCCACCTTGTCGGAACTGAACCTTCATCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGGTCTATGACTACTGCACCGACACTGCAAGATTCCCCGTCACACCTGCTGAGTGTGTCCATCACCGCCACCACTGA 1176 0.4966 MFEGMGGPNGQRGKAREFYALTAGDNCRIKTLQLDLSTWRHSIGGDLASFFLEAVVLPTSFEQLLPAITATASLVRPHRESIALGEWKHKLHLTLFTSQFSCIDSMLGLFLGLLFVGLAASAKFDELFQPSWAMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVTIELKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVFEVDGTPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFMATYRDFQIDACECPVPVTSADTAKKCSSSEDKKYWWDEPTLSELNLHQSHQLMWVRANHMVYDYCTDTARFPVTPAECVHHRHH 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00782 391 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 120 385 IPR044791 GO:0004553
Spst5g00782 391 Gene3D - 116 391 - -
Spst5g00782 391 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 338 385 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Spst5g00782 391 SUPERFAMILY Concanavalin A-like lectins/glucanases 124 389 IPR013320 -
Spst5g00782 391 PRINTS Glycosyl hydrolase family 16 signature 154 172 IPR008264 GO:0004553|GO:0005975
Spst5g00782 391 PRINTS Glycosyl hydrolase family 16 signature 212 225 IPR008264 GO:0004553|GO:0005975
Spst5g00782 391 PRINTS Glycosyl hydrolase family 16 signature 230 247 IPR008264 GO:0004553|GO:0005975
Spst5g00782 391 Pfam Glycosyl hydrolases family 16 127 302 IPR000757 GO:0004553|GO:0005975
Spst5g00782 391 CDD GH16_XET 119 385 IPR016455 GO:0010411|GO:0016762|GO:0042546
Spst5g00782 391 FunFam Xyloglucan endotransglucosylase/hydrolase 112 387 - -
Spst5g00782 391 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 69 310 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00782 Spst-Chr5 7054360 7056996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00782 154 390 Glycoside Hydrolase AT4G03210 78.481 5.04e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00782 K08235 - gmx:100801567 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01049 11 34662831 34664860 Spst5g00782 5 7054360 7056996 PCT