Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01049 ATGTTTCGCTCCTTAGGATTGTTCGTGGGTCTTATGTTGGTTGTGGGGGTGGCTAATGCTGTGCCTTCCACCTCCAACTTTGATCAACTTTTCCAACCAAGTTGGGCTCTTGATCACTTCGTTCATGAAGGAGATCTCCTCAAACTCAAACTTGACAATTATTCCGGGGCTGGTTTTGGATCCAAAAGCAAGTATATGTTTGGGAAAGTGACCATCCAGCTTAAGCTGGTGGAGGGTGACTCTGCCGGGACTGTCACTGCTTTCTATATGTCATCGGAGGGTCCAAACCACAACGAGTTTGATTTTGAGTTTCTGGGCAACACCACAGGGGAACCGTACTCAGTCCAAACTAACGTGTATGTGAACGGAGTGGGCAACAGGGAACAGAGGCTTAACCTTTGGTTCGATCCCACCAAGGATTTCCACTCATATTCTATCTTCTGGAATCAACGTCAAGTTGTGTTTTTGGTGGATGAAACGCCAATAAGGGTGCACACAAACATGGAGCACAAGGGAATTCCATTTCCCAAAGACCAACCCATGGGTGTTTACAGTTCTATATGGAATGCCGACGATTGGGCCACGCAGGGTGGTCGTGTGAAGACGGATTGGAGCCACGCACCATTCTTTGCCACCTATAAGAACTTCGAAATCAATGCCTGTGAATGTCCTGTGTCAGTGGCTGCAATGGATAACACTAAAAAGTGTACCAGCGGTGAGGGTAAGAAGTATTGGTGGGACGAGCCAACTTTGGCTGAACTCAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGAGCCAGACACATCTTCTATGACTATTGCTCTGACACTGCTAGGTTCCCTGTCACGCCAGCTGAGTGTGTCCATCACCGTCACAACTGA 885 0.4802 MFRSLGLFVGLMLVVGVANAVPSTSNFDQLFQPSWALDHFVHEGDLLKLKLDNYSGAGFGSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSEGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPFPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFFATYKNFEINACECPVSVAAMDNTKKCTSGEGKKYWWDEPTLAELNLHQSHQLMWVRARHIFYDYCSDTARFPVTPAECVHHRHN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01049 294 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 24 288 IPR044791 GO:0004553
Spst11g01049 294 Pfam Glycosyl hydrolases family 16 30 205 IPR000757 GO:0004553|GO:0005975
Spst11g01049 294 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 15 213 IPR000757 GO:0004553|GO:0005975
Spst11g01049 294 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 241 288 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Spst11g01049 294 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 292 IPR013320 -
Spst11g01049 294 Gene3D - 13 294 - -
Spst11g01049 294 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Spst11g01049 294 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Spst11g01049 294 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Spst11g01049 294 PIRSF EndGlu_transf 1 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Spst11g01049 294 CDD GH16_XET 22 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Spst11g01049 294 FunFam Xyloglucan endotransglucosylase/hydrolase 14 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01049 Spst-Chr11 34662831 34664860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01049 57 293 Glycoside Hydrolase AT4G03210 75.105 3.67e-139 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01049 K08235 - gmx:100785982 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01049 11 34662831 34664860 Spst5g00782 5 7054360 7056996 PCT