Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00706 ATGGATCGCGGCATCAGTGGCGCCTCCAACCTCCTCATCTTCTACACTCTTCTCTTCATACTCTGTGTTTTCCCTCAAGCATTAACGTTGCGGGTGTCTTCTCCCTCGTCACCGACGACGGGGCAGATTAACTCCAACTCAATCTTAGTTGCACTTCTGGACTCGCATTATACGGAACTCGCGGAGCTGGTGGAAAAAGCTATGCTGTTACAGAAACTAGAAGACACCGTGGCGACACACAACATAACAATCTTCGCTCCGACCAACGAAGCTTTGGACCGCAACCTCGACCCTGATTTCAAACGCTTCCTTCTTGAACCTGCCAATCTGCACTCCCTCCAAACGCTTCTCCTCTCTCACATCATCCCCACCCAAATCGGATCCAAAACCCTAGTCCGCCACGTTACCACTCTCTCCAACCACCAGTTCCGTCTCTCCAAGAATCTCACAACCGTCGACGTGGCCCGCGTCACCCACCCGGATGTCCTCACCCGACCCGACGGCGTTATCCACGGCATCGACCGCCTTCTCCTCCCCCTCTCCGTCGAGGACGACTTCAACCGCCGTCGCACCCTCCGCTCCATCTCCGCCGTCAAACCCGAAGGAGCTCCGGAGGTCGACCCGAGAACCCACCGTCTCAAGAAACCTCCACCGCCGGCGAAACCTGGCTCCCCACCCGCGCTTCCGATCTACGACGCCATGAGCCCGGGACCATCACTGGCGCCGGCGCCGGCCCCGGGGCCAGGCGGACCGCACCACCACTTCAACGGCGAGAAGCAGGTGAAGGATTTCATCCACAGTCTACTCCACTACGGAGGATACAACGAAATGGCAGATATTCTCGTGAATCTAACGTCGTTGGCCGTTGAAATGGGTCGGTTAGTTTCTGAGGGTTACATTCTCACCGTTTTGGCTCCGAACGATGAAGCGATGGCGAAGTTAACGACTGAGCAGTTGAGTGAACCGGGTGCACCGGAGCAGATAATGTACTATCACATTATACCGGAGTACCAGACCGAAGAGAGCATGTATAATGCGGTTCGAAGGTTCGGGAAGGTTCGTTACGATACTCTACGGTTGCCGCATAAGGTGGTGGCGCAGGAGGCTGACGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCGTATTTGTTTGACCCGGATATTTACACGGATGGTCGGATCTCGGTTCAGGGGATTGATAATGCTTTGTTTCCGATGGAGGAGGAGGAGACGGAGCGGGTTAAACCCGTTACTCGGACGGGTCAATCCGCTGCAAAAGTTGTTGTCAAGCACAGAAGAGGAAAATTACTAGAAGCAGCATGCTGGATGCTTGAAACCTTTGGACAACATTCTAGATTAACCTCTTGTCAATGA 1377 0.5476 MDRGISGASNLLIFYTLLFILCVFPQALTLRVSSPSSPTTGQINSNSILVALLDSHYTELAELVEKAMLLQKLEDTVATHNITIFAPTNEALDRNLDPDFKRFLLEPANLHSLQTLLLSHIIPTQIGSKTLVRHVTTLSNHQFRLSKNLTTVDVARVTHPDVLTRPDGVIHGIDRLLLPLSVEDDFNRRRTLRSISAVKPEGAPEVDPRTHRLKKPPPPAKPGSPPALPIYDAMSPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIHSLLHYGGYNEMADILVNLTSLAVEMGRLVSEGYILTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDNALFPMEEEETERVKPVTRTGQSAAKVVVKHRRGKLLEAACWMLETFGQHSRLTSCQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00706 458 MobiDBLite consensus disorder prediction 197 257 - -
Spst5g00706 458 SUPERFAMILY FAS1 domain 240 407 IPR036378 -
Spst5g00706 458 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 6 455 IPR044654 -
Spst5g00706 458 Pfam Fasciclin domain 300 404 IPR000782 -
Spst5g00706 458 Pfam Fasciclin domain 56 179 IPR000782 -
Spst5g00706 458 SMART fasc_3 83 180 IPR000782 -
Spst5g00706 458 SMART fasc_3 302 407 IPR000782 -
Spst5g00706 458 FunFam Fasciclin-like arabinogalactan protein 16 256 407 - -
Spst5g00706 458 Gene3D FAS1 domain 30 179 IPR036378 -
Spst5g00706 458 Gene3D FAS1 domain 285 406 IPR036378 -
Spst5g00706 458 ProSiteProfiles FAS1/BIgH3 domain profile. 261 389 IPR000782 -
Spst5g00706 458 MobiDBLite consensus disorder prediction 217 232 - -
Spst5g00706 458 ProSiteProfiles FAS1/BIgH3 domain profile. 44 177 IPR000782 -
Spst5g00706 458 SUPERFAMILY FAS1 domain 46 180 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00706 Spst-Chr5 6111502 6114182 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00706 - - gmx:100815434 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00706 5 6111502 6114182 Spst11g01132 11 35642026 35644537 PCT