Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01132 ATGGATTGCCGCATCTATGGCGTCACCATCCTTCTCTTCCTCCTCCCAAGCCTCACATTATCCCACTCACAGGGCCAAATAAACTCAAACTCAATCCTCGTCGCTCTGTTGGACTCGCATTACACTGAAGTCGCTGAGCTAGTGGAAAAAGCCATGCTCCTCCAAACGCTCGAAAACACGGTAATGAACCACAACATCACAATCTTCGCACCCAGAAACGAGGCCCTCGAACGCGATCTCGACCCTGATTTCAAGCGCTTCCTTCTCGAACCGCGTAACCTGCAATCCCTCCAAACCCTTCTCATGTCCCACATCGTCCCCAAAAGAATCACAAAACCCGAATACCAGCCCAGGTTAGTTAAATCGGGCCGTCCGACCCGATACAAAACCCTCGCCCCGCACCAACACCTCACTCTCCAAACAGTTAATTCCACTCACTGGAACGTCGACACTTCCTGGGTCACTCACCCGGATTCCATGACCCGACCCGATGGCGTCATCCACGGGATCGACACGCTCCTCATCCCTCGCTCCGTCCAAGACGACTTCAACCGCCGCCGCAACCTCATCTCCATTGCCGCCGTGAAACCAGAACCTGCCCCGGAGGTCGACCCGCGTACCCACCGCTTGAAAAAACCGGCTCCCCCGTCGCCGGCAGGCTCCCCGCCGGCACTACCGATCTACGATGCGATGGCGCCGGGACCCTCCCTGGCTCCAGCGCCGGCGCCTGGACCTGGTGGACCCCACCACCACTTCAACGGCGAGAAACAGGTGAAAGACTTCATCCAAACTCTCCTCCACTACGGAGGTTACAACGAAATGGCGGATATTCTGGTAAACTTAACGTCGCTGGCGACGGAAATAGGACAGTTAGTTTCGGAGGGTTACCGTTTGACGGTGCTGGCTCCTAACGACGAAGCTATGGCGAAGTTAACGACGGACCAGTTGAGTGAACCGGGTTCGCCCGAACATATTATGTACTATCACTTGATTCCCGAGTATCAGACCGAGGAGAGCATGTACAATGCCGTTAGAAGGTTCGGGAAGGTTCGTTACGACACATTACGGTTGCCGCATAAGGTGTCGGCGCAGGAGGCTGACGGCTCCGTTAAGTTCGGGCACGGGGACGGGTCTGCGTATTTGTTCGACCCGGATATTTACACGAATGGACGGATCTCCGTTCAGGGAATTGACGGCGTTCTTTTTCCGCCTCAGGAGGATGAAGCTGGGGCCGTGACCCGGGCCCAACTCGCTAAGGTCGTCGTTAAGCAGAGAAGAGATGGGAAAAAGGTAAAGTCCATAATTGATTTGTTTAATGATATTTTCTTTATTTTTGTGATATCTGTCGATTCCACACAGTTTGTGTTTAAGCTAAAGTTCGATGGAATGTGGCAGGAAAATTGTTGGAAACAGCATGTTGGATGCTTGGAACCTTTGGACAGAATTCTAGATTCATCTCTTGTGAATAAAGTGCTCATATCAGCAGCATGCTAG 1494 0.5295 MDCRIYGVTILLFLLPSLTLSHSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMNHNITIFAPRNEALERDLDPDFKRFLLEPRNLQSLQTLLMSHIVPKRITKPEYQPRLVKSGRPTRYKTLAPHQHLTLQTVNSTHWNVDTSWVTHPDSMTRPDGVIHGIDTLLIPRSVQDDFNRRRNLISIAAVKPEPAPEVDPRTHRLKKPAPPSPAGSPPALPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIQTLLHYGGYNEMADILVNLTSLATEIGQLVSEGYRLTVLAPNDEAMAKLTTDQLSEPGSPEHIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVSAQEADGSVKFGHGDGSAYLFDPDIYTNGRISVQGIDGVLFPPQEDEAGAVTRAQLAKVVVKQRRDGKKVKSIIDLFNDIFFIFVISVDSTQFVFKLKFDGMWQENCWKQHVGCLEPLDRILDSSLVNKVLISAAC 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01132 497 SMART fasc_3 67 177 IPR000782 -
Spst11g01132 497 SMART fasc_3 299 404 IPR000782 -
Spst11g01132 497 Pfam Fasciclin domain 40 176 IPR000782 -
Spst11g01132 497 Pfam Fasciclin domain 281 403 IPR000782 -
Spst11g01132 497 FunFam Fasciclin-like arabinogalactan protein 16 253 404 - -
Spst11g01132 497 Gene3D FAS1 domain 35 179 IPR036378 -
Spst11g01132 497 ProSiteProfiles FAS1/BIgH3 domain profile. 28 174 IPR000782 -
Spst11g01132 497 SUPERFAMILY FAS1 domain 30 177 IPR036378 -
Spst11g01132 497 ProSiteProfiles FAS1/BIgH3 domain profile. 258 386 IPR000782 -
Spst11g01132 497 Gene3D FAS1 domain 275 404 IPR036378 -
Spst11g01132 497 SUPERFAMILY FAS1 domain 237 404 IPR036378 -
Spst11g01132 497 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 21 433 IPR044654 -
Spst11g01132 497 MobiDBLite consensus disorder prediction 198 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01132 Spst-Chr11 35642026 35644537 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01132 - - gmx:100790599 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00706 5 6111502 6114182 Spst11g01132 11 35642026 35644537 PCT