Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00670 ATGAATGTGGTTGACCAATATTTTTACGATCCCAACCCGATCTTGATCCGTGAGGTTTGGGCCTACAATCTTGAATACGAATTCCACATCCTCCGCCATATAATCGACGATTACCCTTTCATTTCCATGGACACCGAGTTCCCCGGTTTTCTTTACAGTACCAATTCGAAGGCTTCCTCAAACACCACCAACGGAAAAGTGGAACCCTCCCAGAACTACGGCTGCCTCAAGTCCAACGTTGATGTCCTCGATATTATCCAGGTTGGTCTCACGCTTTCCGATGCAAACGGTAACCTCCCTCACCTTGGGACTAGTAAAAAATTTATTTGGGAGTTTAATTTTCGGGATTTCGACGTGGAGAAAGACCCTCACTCGCCTTCTTCCATCGCTCTCCTCCGCCGTCAAGGGATCGACTTCAGCCGCAATGCGGCGGAGGGCATCGACTCCTTGCTGTTCGCAGAATTGATGATGTCGTCGGGGTTGGTATGCAATGAGGAGGTGAGTTGGGTGACGTTCCACGGCTCGTACGATTTCGGGTATTTGGTCAAGATTCTGACCCGACAAAGTTTGCCCCACGGGGTAAAGGATTTCTTGGAAACGTTGAAGGCGTTTTTTGGAGATAACATTTACGACCTCAAGCACATGATACGGTTCTTTGACGGTCTTTATGGCGGTTTGGACCGGCTTGCGGAAACCCTCAAATTGAACCGAGTCGTTGGGAGGTGCCACCAAGCCGGCTCGGATAGCTTGCTGACCTGGCATATATTTGAGAAAGCGACGAATATTTATTGTAGAAATGAAGGGCCTAAGAAATATGCAGGAGTTTTGTATGGATTAGAACTTTCATGTAGTTAG 855 0.4784 MNVVDQYFYDPNPILIREVWAYNLEYEFHILRHIIDDYPFISMDTEFPGFLYSTNSKASSNTTNGKVEPSQNYGCLKSNVDVLDIIQVGLTLSDANGNLPHLGTSKKFIWEFNFRDFDVEKDPHSPSSIALLRRQGIDFSRNAAEGIDSLLFAELMMSSGLVCNEEVSWVTFHGSYDFGYLVKILTRQSLPHGVKDFLETLKAFFGDNIYDLKHMIRFFDGLYGGLDRLAETLKLNRVVGRCHQAGSDSLLTWHIFEKATNIYCRNEGPKKYAGVLYGLELSCS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00670 284 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 16 280 IPR039637 GO:0004535|GO:0030014
Spst5g00670 284 Pfam CAF1 family ribonuclease 20 147 IPR006941 -
Spst5g00670 284 Gene3D - 4 282 IPR036397 GO:0003676
Spst5g00670 284 SUPERFAMILY Ribonuclease H-like 16 279 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00670 Spst-Chr5 5763446 5764300 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00670 K12581 - gmx:100817875 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00670 5 5763446 5764300 Spst5g00670 5 5763446 5764300 ECH
Spst5g00670 5 5763446 5764300 Spst11g01167 11 36001755 36002588 PCT