Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01167 ATGGGCGTGCTCAGCGAAGATCCGATCGTCATCCGTGAAGTTTGGGCTTCCAATTTAGAATCCGAATTCCAACTCATCCGCGAACTCATCGATCGCTATCCTTTCATCTCCATGGACACCGAATTCCCCGGTGTGGTTTTCCGGCCCCATGTGGACCCTTCCAAACCCTACAACCACCGCACGCGCCGCCCCGCTGACCACTACCGCCTCCTCAAGTCCAACGTCGACGCGCTCAACCTCATCCAGGTCGGCCTCACGCTCTCCGATTCCGCCGGGAATCTCCCCGGCGCCGACGGGAACCGCTTCATCTGGGAATTCAACTTCCGGGATTTCGACGTGGCGCGTGACGCCTACGCGCCGGACTCCATTGCGCTCCTCCGCTGCCAGGGGATCGACTTCGAACGCAACGCGGCCGTCGGCGTAGACTCCACGCGCTTCGCTGAGCTGATGATGTCCTCGGGACTCGTGTGCAACGACGCCGTGAGCTGGGTCACGTTTCACAGCGCGTACGATTTCGGGTACTTGGTTAAGATACTGACCCGAAGGGATTTACCGACCCGGTTGGAGGAATTTTTAAGCGTTGTGAAAGTGTTTTTTGGAGATAAGGTTTATGATGTGAAGCACATGATGAGGTTCTGTGATACACTATACGGTGGTTTGGACCGGGTTGCACGGACCCTTAACGTGGACCGCGCCGTAGGGAAGTGCCATCAGGCTGGGTCAGACAGCTTGCTGACCTGGCACGCCTTCCAGAAGATTGTGGATATTTATTTTGTCAAAGATGAACACCAAAAACATGCTGGTGTGTTGTTTGGACTAGAAGTTCTATGTTAA 834 0.5528 MGVLSEDPIVIREVWASNLESEFQLIRELIDRYPFISMDTEFPGVVFRPHVDPSKPYNHRTRRPADHYRLLKSNVDALNLIQVGLTLSDSAGNLPGADGNRFIWEFNFRDFDVARDAYAPDSIALLRCQGIDFERNAAVGVDSTRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRRDLPTRLEEFLSVVKVFFGDKVYDVKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDIYFVKDEHQKHAGVLFGLEVLC 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01167 277 SUPERFAMILY Ribonuclease H-like 10 272 IPR012337 -
Spst11g01167 277 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 9 274 IPR039637 GO:0004535|GO:0030014
Spst11g01167 277 Gene3D - 2 275 IPR036397 GO:0003676
Spst11g01167 277 FunFam Putative CCR4-associated factor 1 7 2 276 - -
Spst11g01167 277 Pfam CAF1 family ribonuclease 14 141 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01167 Spst-Chr11 36001755 36002588 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01167 K12581 - gmx:100811298 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00670 5 5763446 5764300 Spst11g01167 11 36001755 36002588 PCT