Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00606 ATGGACCTAGCGCCTCCTTTGACTTCAACAATAAGTTGGGAGTACCACTATAGGGCCAGATCTTCTCTGAACGGGTCTGCTTCAAATCTTCCAGATGGTGCTGCAGGGCGTTCCTTTGCTACGTCATTTTCTGGTCAGTCTGGTGTAGTCTCCCCAGTTCTTGCTGCAGGTTCTATTCAGGGATTGCACAACGTTCATGGGAGCTTTAATGTACCCAATATGCCCAGTTCACTTACATCAAGAAACTCAACAATAAATAGTGGTCCAACTGGGGGAGTAGTTCAACAACCTTCAGCAAGCCTTTCAAGTGGAAGATTTGCATCAAATAATCTACCCGTTGCTTTGTCACAGGTAAATGCATTTGTGTTTGAACATCTTGAGAATAATGCCTGCAGTTCTGAGCATATTGTTCTATCTCATGGAAGCTCCCATGGACATTCAGGAGTCAACAGTAGAGGAGGTATAAGTGTTATAGGAAATCCTGGATTTAATAGTAGCACAAATGGAGTTGCCGGTCCTATTCCTGGGATTCTTCCAACTTCTGCTGCAATTGGTAACCGAAATGCTGTTCCAGGATTGGGAGTATCCCCAATTTTGGGCAATGCAGGTGCTCGAATCACAAGTTCGATGGGAAACATGGTTGGTGGGGGCAACATTGGGAGGATAAGCTCTGGAGGAATGTCTGTTCCTGGTCTTGCTTCTCGTCTAAATTTAGGTGGAAACACTGGATCTGGTGCTCTAGGCGTGCAAGGACAGAATAGATTGATGAGTGGTGTTCTTCCGCAAGGTTGTTCAGCTACTGCTCTTCTGCCAAATTATATAGATTGTGTTGCTGTGGTTTCTGAATGTCATGTACTAGAGATAGAGATACGATCTCCACAGGTAATTTCAATGCTAGGAAATTCATATCCTAGTGCTGGAGGTCCGCTTTCACAAAGCCATGTTCAAACAGTAAATAACTTGAACTCTATGGGGATGCTGAATGATGTGAATTCTGGTGACAGTTCACCTTTTGATATCAATGACTTCCCTCAACTGAGTACTCGTCCTAGTTCTGCTGGTGGGCCTCAAGGACAGTTGGGTTCTTTACGAAAACAGGGTCTTGGAGTTAGTCCCATTGTCCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGACTTCCCAGCTTTACCAGGATTCAAAGGAATAAGGGCTCTTTGCTTTCTTTTCTGCATTGATGAGTCTTTGATGGCTTGTGGTAATGCAGATTTTGCAATGGATATGTACCAGAAAGAACAACTTCATGATAATACTGTGTCAATGATGCAATCCCAGCATTTCTCTCAGATGGGGAGGTCTGCTGGTTTCAGCTTGGGGGGTTCATATCCTTCACATCGGACACAACAGCAACAGCAGCAGCATACCCCTTCAGTGAGTAGTAATGGTGTCTCCTTTTCATCTGTAAACAATCAAGATCTTCTCCATTTGCATGGAGCAGATATGTTTCCATCTTCACACTCAACTTATCATTCACAGACCAGTGGACCTCCTGGGATTGGACTAAGGCCTCTAAATTCTCCAAATACTGGTATGGGTTCATATGACCAGCTTATCCAGCAGTATCAACAGCAGCAGAACCAGTCCCAGTTCCGCCTTCAGCAAATGTCAGCTGGAAATCAGTCTTTTAGGGATCAGGGAATGAAGTCTATGCAAACTGCACAATCTAGTCCAGATCCATTTGGTGCACTTGGTTTGTTCAGTGTAGTCCATATAAGTGATCCGGACCTGAAATATCTTGCTCATGGGATTGATCTTACAACACTTGGGTTGAATTTGAATTCATCAGAAAATCTTTACAAGACTTTTCGATCTCCGTGGTCTGATGAACCAGCCAAGGGTGATCCAGAGTTCAGTGTATTACAATGTTATTATGCTAAACAACCGCCTGCTCTACATCAAGGTTATTTTTTGAAGTTTTCGGTGGAAACATTGTTTTACATATTTTACAGCATGCCCAAGGATGAAGCTCAACTGTATGCAGCAAATGAACTTTACAAACGAGGTTGGTTTTATCATAAAGAGCACCGTTTATGGTTTATAAGAGTTGCCAACATGGAGCCGCTTGTCAAAACAAATACATACGAGAGAGGATCTTACCACTGTTTTGATCCAAACTCCTTTGAAACAGTCCGGAAGGATAATTTTGTTCTTCACTATGAATTGGTGGAGAAGAGACCGTCTTTGCCTCAACATTGA 2235 0.4295 MDLAPPLTSTISWEYHYRARSSLNGSASNLPDGAAGRSFATSFSGQSGVVSPVLAAGSIQGLHNVHGSFNVPNMPSSLTSRNSTINSGPTGGVVQQPSASLSSGRFASNNLPVALSQVNAFVFEHLENNACSSEHIVLSHGSSHGHSGVNSRGGISVIGNPGFNSSTNGVAGPIPGILPTSAAIGNRNAVPGLGVSPILGNAGARITSSMGNMVGGGNIGRISSGGMSVPGLASRLNLGGNTGSGALGVQGQNRLMSGVLPQGCSATALLPNYIDCVAVVSECHVLEIEIRSPQVISMLGNSYPSAGGPLSQSHVQTVNNLNSMGMLNDVNSGDSSPFDINDFPQLSTRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGIRALCFLFCIDESLMACGNADFAMDMYQKEQLHDNTVSMMQSQHFSQMGRSAGFSLGGSYPSHRTQQQQQQHTPSVSSNGVSFSSVNNQDLLHLHGADMFPSSHSTYHSQTSGPPGIGLRPLNSPNTGMGSYDQLIQQYQQQQNQSQFRLQQMSAGNQSFRDQGMKSMQTAQSSPDPFGALGLFSVVHISDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAKGDPEFSVLQCYYAKQPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRLWFIRVANMEPLVKTNTYERGSYHCFDPNSFETVRKDNFVLHYELVEKRPSLPQH 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00606 744 MobiDBLite consensus disorder prediction 338 360 - -
Spst5g00606 744 PANTHER CCR4 NOT-RELATED 62 738 IPR040168 GO:0030015
Spst5g00606 744 Gene3D - 563 744 IPR038635 -
Spst5g00606 744 MobiDBLite consensus disorder prediction 497 526 - -
Spst5g00606 744 Pfam NOT2 / NOT3 / NOT5 family 613 733 IPR007282 GO:0006355
Spst5g00606 744 MobiDBLite consensus disorder prediction 446 477 - -
Spst5g00606 744 FunFam probable NOT transcription complex subunit VIP2 isoform X1 563 744 - -
Spst5g00606 744 MobiDBLite consensus disorder prediction 497 512 - -
Spst5g00606 744 MobiDBLite consensus disorder prediction 78 97 - -
Spst5g00606 744 MobiDBLite consensus disorder prediction 338 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00606 Spst-Chr5 5170464 5179037 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00606 K12605 - gmx:100806559 1155.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00606 5 5170464 5179037 Spst11g01447 11 38902577 38905238 PCT