Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01447 ATGCTAGGAAATTCTTATCCTAGTGCTGGAGGTCCACTTTCCCAAAGCCATGTTCAAGCAGTAGGTAACTTGAACTCGATGGGAATGTTGAATGATGTGAATACCAATGACAGTTCACCTTTTGACATCAATGACTTTCCTCAGCTGACAAGTCGTCCGAGTTCTGCTGGAGGACCTCAAGGACAGTTGGGTTCTTTACGAAAACAGGGGCTTGGTGTCAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAGAATGAAGATTTTCCAGCTTTACCAGGATTCAAAGGCGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTCCATGACAATGCTGTACCTATGATGCAATCCCAGCACTTCACCATGGGAAGGTCAGCTGGTTTCAGCTTAGGGGGTACATATTCGTCACATCGAGCACAACAGCAACAGCATGCACCTACGGTCAGTAGTGGCAATGTCTCTTTTTCATCTGTTAACAACCAGGATCTTCTCCATCTGCATGGATCAGATATTTTCCCATCTTCACATTCAACCTATCATTCACAGACCAGTGGACCTCCTGGTATTGGATTAAGGCCTTTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCATACGACCAGCTTATCCAACAATATCAACAGCATCAGAACCAGTCTCAATTTCGCCTTCAAATGTCAGCTGTAAATCAATCTTTTAGGGATCAGGGCATGAAGTCTATTCAAACCACACAATCTGCACCAGATCCATTTGGTCTGCTTGGCTTGTTAAGTGTGATCAGGATGAGTGATCCTGACCTGACATCTCTTGCTCTTGGAATTGATCTTACTACACTGGGATTAAATTTGAATTCATCCGAAAATCTTCATAAGACCTTTGGTTCTCCCTGGTCTGATGAACCAGCTAAGGGTGATCCAGAGTTTAATGTGCCACAATGTTATTATGCCAAACAGCCACCTGCTCTACATCAAGGTTACTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACATATTTTACAGCATGCCCAAAGATGAAGCACAGTTATATGCCTCCAATGAGCTTTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAGAGTTCCCAACATGGAGCCGCTGGTTAAAACAAACACATACGAGAGAGGATCTTATCACTGTTTCGAACCAAGCATATTTGAAACCGTCCGCAAGGATAATTTTGTTCTGCATTATGAAATGTTGGAAAAGAGACCACATCTGCCTCAACATTGA 1287 0.4204 MLGNSYPSAGGPLSQSHVQAVGNLNSMGMLNDVNTNDSSPFDINDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAVPMMQSQHFTMGRSAGFSLGGTYSSHRAQQQQHAPTVSSGNVSFSSVNNQDLLHLHGSDIFPSSHSTYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKSIQTTQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKGDPEFNVPQCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYASNELYNRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFEPSIFETVRKDNFVLHYEMLEKRPHLPQH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01447 428 MobiDBLite consensus disorder prediction 181 209 - -
Spst11g01447 428 Gene3D - 247 428 IPR038635 -
Spst11g01447 428 FunFam probable NOT transcription complex subunit VIP2 isoform X1 247 428 - -
Spst11g01447 428 PANTHER CCR4 NOT-RELATED 11 422 IPR040168 GO:0030015
Spst11g01447 428 Pfam NOT2 / NOT3 / NOT5 family 297 419 IPR007282 GO:0006355
Spst11g01447 428 MobiDBLite consensus disorder prediction 139 159 - -
Spst11g01447 428 MobiDBLite consensus disorder prediction 29 67 - -
Spst11g01447 428 MobiDBLite consensus disorder prediction 29 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01447 Spst-Chr11 38902577 38905238 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01447 K12605 - gmx:100807026 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01447 11 38902577 38905238 Spst11g01447 11 38902577 38905238 ECH
Spst5g00606 5 5170464 5179037 Spst11g01447 11 38902577 38905238 PCT