Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00586 ATGGAATACTTGGAAGGACAGGGACCCGTGAAGGAGAGAAACAGAAGCCAAAAAGGCCCATCCAAACGAAGCCTTATTCTCTCTCTCTTTAAAATACACCTTGTGGTTTTCTTTACACTTCGCTCGCTCTCTTACCCTGCGTATTCCTTCTTTTCGTGCGTGCGCTTCTGGAACAATCTCCTCTTACCGATCTCACCACTGGAAATCATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCAGAAGAGATGGATTTGACTGATCAGCAGCTGAAACCATGCAAATGTGGTTATGAGATATGTGTCTGGTGTTGGCATCACATACTGGAAATGGCTGAAAAGGATGACACAGAGGGACGATGCCCTGCCTGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAAAAAGATGAAGAACCAGAAAGCGAAATCTAAATCATCTGAAGCACGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGGAACCTTGTTTACATAGTGGGCTTGCCTCTCAATCTGGCAGATGAAGATCTTCTCCAGCAGCGAGAATATTTTGGTCAGTACGGGAAGGTCTTAAAAGTGTCAATGTCTCGTACTGCAGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTGATTATTAGTAGCAGTGGTGGTGATTGCCATAGTGGCATAGAGCAGAGTGGCTTGTGGCTAATCTTGAATGCTTGTCGTGGAGCACTTCGCTCTTCTGAAATCACGGCCATTCTTGTCTGGCTTGTTTTGGAACCACTAAATATTGTCATGCGTGGCTCAGAAACATGTAATCCAGATTGTCTGTATCTGCATGAGATTGGCTCTCAAGAGGATAGTTTCACAAAAGATGAAATCATTTCAGCATACACTAGAAGTCGTGTTCAACAAATTACTGGTGCTGCAAACAATATGCAACGGCGCACTGGTATTGTATTGCCACCTCCATTGGATGATTGTGCAGACAATTCATCAGGAAAACCAATTCTGGACAATACATCAAGTACCACTGTTAGCACTGTTCAAGGTTCACCTCCTAATGGGAGTTCTGGGAGACCTTTACCTCTTCCTGCTGCTGCATGGGGTACACGGGCTACACATTTTCAGCCGGCTGCCGGTGGCTTATTATCTGCAAATGAAGTGGCCAAGCCTAAACCTGATACTATCAACAGCACACTACCCTTTTTGTCTGCTGGTGCAGGAACAATTCAGCCTTCATTAAATAGTGACGTGACAAAGAGACCGCTGTCAAGTGATGGGAGTCATAGTACGACTCCTGAGGTAAAAAATGAATTACCGAAACCTGTTAAACTATATAGAAGCATGGATAACATGGCTAGAGCTAGTGAAAGAACTACTGCTTCTGATGTTCGTCTTTCACCTGTGAAATTGAACAACCAGTTGTCTTCTCTACCATTGTCCAGAGGTAGTGACAGAGGCAGTTGTACTGCAATGAAAACACCAAATTCTATTGACATCACTGGACAGTCATGCAGCTTTGGTCCTGCGGAAGCAATTATATCTGCTAGTGAAGTGATTGAGAATTTGTCCTGTGATTTGTCTTCTGTTATTTTTGATGGAAATTCCCCAAATGAACACTACAGCCTCCCCAAACCTATCAGCTCATCTGATAATGTGTTGGCTGAATCTATGCAATCTCAAGAATCACAGTATAATGCTGACAAATTTAGAGATGCAATGATTACAAATGCAGACAGTAAAGCTGCTTCTTCAAACAATGAAGTTTGTAGTTTAAAGGAACAGTGTGATTTGTCATTGGATTCTCAATCTCAAGTAGTATTGGCTAATACTGAAGTAGAAGACGACATAACAACTTTTGATAATCAAAGACTTAAGGATCCTGAAGTTGTTTGTTCATATTTGCCAAAGTCAGCCAGTTTTCGTCATGTTCCAAATCATTCTCGTCATCATCTTCTGCCGCATGGTGAACCACACATTGTAAATTCTGCTTCTTTAGATGCCAATGATAAAGTTGGGGATGACTCAGTATTACATGCACATAACATAACATGCAATGGATATTCTGAAAAATCAACGAGCTCTAGTTCTTATGGTTTCCTCCATGATGAAAGAAATGAGCAACAAATTGAAAGTTTAGTTAGTGAAGTCGCTAGTATTGGAAGTGATGCTGTTATGGACAAGGGTGAGAGTAGTATCATTTCAAATATTTTGTCCATGGAGTTTGATGCCTGGGATGACTCACTAACATCACCTCACAGTTTGGCCATGTTGTTGGGTGACAACACTGAGAAGCAAAATGACTCACTAAAAAAATCTAGTTCTTGGAAAATTCAAAGTAACAATCAGTCAAGATTCTCTTTTGCAAGACAAGAAGAATCCAAAATCCAAGCCAATTTACATCCATCTTCTGCTGCTATCCAGCAATTTCCGAATAAAGGTTCACTCATACATGATTTTGTGGAAAGAGACTTTTCTTTGGACAAGGTGGGTATGACAAATGGCTACCCCTCCAATAACCTTGAGGAATCTGGAAATCTTGGCAGTGGTCATTTTTCCCCTTCAAACAATAAGCTTTCCGCTGTTTCAAGAGCACAAATTTCAGCGCCACCAGGATTTTCTGTTCCAAACAGGGCACCACCTCCTGGTTTCTCTTCTTTTGAGAGAGCAGGGCAGCCTTTTGACTCCCTTTCTGGGAATTCATTGCTTGACTCTTCTTTCTTATTGAGAAGTTCATATCAAACACCCTCAACTGGAAATATTGGTGGTCCAGGAGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGTAAAGGTAGAATTCAAGGTGCACGAAATAGCCCATTGCTGGACATGCGGTCCAATTACCCTGAACAGTTAAATTACTTTGAAAATGAGGCTAGAGTTCAATTATTGATGCAAAGATCACTCTCACCACAGCAAAATCTTCGATTTTCTGATATAGGGAATTCCTTTTCTCAGCTTGGTGATTCTTATGGCATTTCTTCTAGGTTAAATCAATCACAAGTCAATAATCTGGCTTCATTTCCTCAGTTGTCCCTTCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGTCAATTGGATGGGTGGAATGAAGTGCAGAATGGAAATAGTTTGGGTGTGGCTGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAGTTTTATAGAGGATATGATGACTCAAAATATAGGATGCCAAATTCTAGGGATCTGTACAACAGAACATTTGGGATTTGA 3312 0.4136 MEYLEGQGPVKERNRSQKGPSKRSLILSLFKIHLVVFFTLRSLSYPAYSFFSCVRFWNNLLLPISPLEIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMEKKMKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDLLQQREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVIISSSGGDCHSGIEQSGLWLILNACRGALRSSEITAILVWLVLEPLNIVMRGSETCNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGAANNMQRRTGIVLPPPLDDCADNSSGKPILDNTSSTTVSTVQGSPPNGSSGRPLPLPAAAWGTRATHFQPAAGGLLSANEVAKPKPDTINSTLPFLSAGAGTIQPSLNSDVTKRPLSSDGSHSTTPEVKNELPKPVKLYRSMDNMARASERTTASDVRLSPVKLNNQLSSLPLSRGSDRGSCTAMKTPNSIDITGQSCSFGPAEAIISASEVIENLSCDLSSVIFDGNSPNEHYSLPKPISSSDNVLAESMQSQESQYNADKFRDAMITNADSKAASSNNEVCSLKEQCDLSLDSQSQVVLANTEVEDDITTFDNQRLKDPEVVCSYLPKSASFRHVPNHSRHHLLPHGEPHIVNSASLDANDKVGDDSVLHAHNITCNGYSEKSTSSSSYGFLHDERNEQQIESLVSEVASIGSDAVMDKGESSIISNILSMEFDAWDDSLTSPHSLAMLLGDNTEKQNDSLKKSSSWKIQSNNQSRFSFARQEESKIQANLHPSSAAIQQFPNKGSLIHDFVERDFSLDKVGMTNGYPSNNLEESGNLGSGHFSPSNNKLSAVSRAQISAPPGFSVPNRAPPPGFSSFERAGQPFDSLSGNSLLDSSFLLRSSYQTPSTGNIGGPGDIEFMDPAILAVGKGRIQGARNSPLLDMRSNYPEQLNYFENEARVQLLMQRSLSPQQNLRFSDIGNSFSQLGDSYGISSRLNQSQVNNLASFPQLSLQQSRNAVLSNGQLDGWNEVQNGNSLGVAELLRNERLGFNKFYRGYDDSKYRMPNSRDLYNRTFGI 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00586 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 146 IPR013083 -
Spst5g00586 1103 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 70 146 - -
Spst5g00586 1103 MobiDBLite consensus disorder prediction 345 380 - -
Spst5g00586 1103 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 281 1097 IPR039780 GO:0004842|GO:0030014
Spst5g00586 1103 MobiDBLite consensus disorder prediction 424 451 - -
Spst5g00586 1103 MobiDBLite consensus disorder prediction 853 872 - -
Spst5g00586 1103 MobiDBLite consensus disorder prediction 424 455 - -
Spst5g00586 1103 ProSiteProfiles Zinc finger RING-type profile. 78 126 IPR001841 -
Spst5g00586 1103 SUPERFAMILY RNA-binding domain, RBD 173 218 IPR035979 GO:0003676
Spst5g00586 1103 Pfam RING/Ubox like zinc-binding domain 78 130 - -
Spst5g00586 1103 CDD mRING-HC-C4C4_CNOT4 77 127 IPR039515 -
Spst5g00586 1103 Gene3D - 180 236 IPR012677 -
Spst5g00586 1103 SUPERFAMILY RING/U-box 70 135 - -
Spst5g00586 1103 MobiDBLite consensus disorder prediction 349 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00586 Spst-Chr5 4890067 4898350 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00586 K10643 - gmx:100796804 1536.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00586 5 4890067 4898350 Spst5g00586 5 4890067 4898350 ECH
Spst11g01423 11 38632666 38640114 Spst5g00586 5 4890067 4898350 PCT