Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01423 ATGGGTACTTTGGGAACTCAAACACTGAACCCAGTTGTGGTGTTGACAAAACAAGGAGTCGAAAGACTAAATTCTCAGTATCACATCTGTGGTGTGGTTCTGTTTTCTCATATGTTATCTCGGGCAATCATGAGTGACAAAGGAGAAAGAACTTGTCCTCTCTGTGCTGAAGAAATGGATTTGACAGATCAGCAGTTGAAGCCTTGCAAATGTGGTTATGAGATCTGTGTCTGGTGCTGGCATCACATAATGGACATGGCTGAGAAGGATGACACGGAAGGGCGTTGCCCTGCATGTCGATCTCCTTATGATAAGGAAAAGATTGTCGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAAGTTAATATGGAGAAAAAGATGAAGACTCAGAAGGCAAAGTCTAAATCATCTGATGGGCGTAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATCGTTGGGTTGCCTCTCAATCTTGCAGACGAAGATCTTCTTCAGCGGAGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAGGTGTCAATGTCTCGAACGGCAGCTGGTGTCATTCAACAGTTTCCAAATGATACTTGCAGTGTATATATAACTTATTCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGTGCCTTGCAGCAATCCAGATTGTCTATATTTGCATGAGATTGGCTCTCAAGAAGATAGCTTTACTAAAGATGAAATAATTTCAGCATACACCAGAAGTCGAGTTCAACAGATCACTGGTGCAACTAACAATATGCAACGGCAGTCAGGGAATGTATTACCTCCTCCACTGGATGATGATATGAACACTACTTCTGCAAAGCCTATTGTGAAAAATCCTTCAAGTAACTCTGTTAGCACTGCTAGAGGCTCACCTCCGAATGGAATCTATGAGAGACAGGTTACCCTTCCTGCTAGTGCTGCATGGGCTACTCAGGCCTCAAATTGTCAGCCCCCTGCTGGAGGTCTATCTTATCCAAATGGGCCATCAAAGCCCAAACCTGATACAGGCAGCTGCACATTAGCATTTTCTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGACCACCATCGAGTGATGGGAGTCATAGTATGGCAACTAGAGTGAAAAGTGAATTGTTGAAACCTGTTAAACAATACAATAGTGCGGACAGTCTGGTTAGTGCAAGAGAAAAATCTTCATCTTTAAACGTTTCTCCTGTTCCTGTGAATTTGAATGGCCAGTTGTCTTCTCTACTGTTGTCTCGAGATAGTGATGGCAATTGTACTACAGCAAACACATTAAATTCTACTAACATGACTGGACAGTCTTGTAACTCTGTTCCTGAGGAAGCGATGCCTGCTACCAACGAAGAGATTCTGAATTTGTCCATTGAGTTGTCCTCAATTAGCATTGATGGAAATGCTGAACATTGCGGTATAACCAAACCTAATAGCCCACCCACTGATTATGTTTTGATTAAATCTCCTCAAAATCAAGGATCACAATATGATGTGAACAGATTTAGAGATGCAACAACTACAAACATGGCTGGTAAAGCTACGTCAGATATTATGGCTTGTAATTCTAGGGAACAGTGTGATTGGAAATTGGATTCTCAATCTCTAGTAGTATCAGATGCTACTGAATTTGATGATGATGTAACGTCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCATTCTTATTTGCCCAAGTCAACCAGTTTCCTTCATGTATCAAACCTTTCTAGCCCTTGCCTTCTGCAGCATGGTGAACGTTGTACTGCCATGAATGCAGGTTCTGTATCTGCTGATGAATCTATATTAAATGCATCTAATATATTATGCAATGGCCACCCGGAGAAATTGGTTAGCAGCAGCTCCTATGGTCTGCTTAATGATGAAAGAAATGGACATAGCATTCAAAGATTAGTTGGTGACACAGTAAATCCTGGACATGATGTTACTATGGATAAGGGTGAAAGTAGTATAATTTCTAATATTTTGTCCATGGACTTTGATGCCTGGGATGACTCATTAACATCACCGCATAATTTAGCTAAGTTGTTGGGTGATAAAACTGATAACCAGTCTGGTCCATTAAACAAATCTAGTTCTTGGAAAGTTCATAGTAACAATCAATCAAGGTTCTCTTTTGCAAGGCAGGATGAATCCAAAATCCAATTGTTTGATGCACATGCTTCTTATGGTGTAAGCCATCAACGGCCAAATCGTGCGGTCTTCCAGAATTTTACAGAAAGAGACTTGTATATGGATAAGTTGGGCATTGCGAATGGATTTCCAACCAGTAACTTTGAGGAAGCTGAAAATATGGCTAGTGGTCATTCCTTTTCATCTAATAAGCTTTCAGCCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCAGGCCACCACCACCTGGTTTTTCTTCCCATGAGAGAGTGGAGCAGGCTTTTGATTCCATTTCTGGGAATTCTTTGCTTGACCATTCTTCCCTTTTGAGAAATTCATGTCAGTCACCTTCTGCTGGAAACCTTGGTGGTGCTGGGGACATTGAATATATGGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCGGCACTGGACATTCGATCTAATTTCATGCCACAATTAAATTACTTTGAAAATGATGCCAGACTACAATTATTGATGCAAAGATCTCTGTCACCGCAACAAAACCATAGATTTTCTGAAATTGGGAATGCTTTTTCTCAACTTGGCGATTCTTATGCTGTTTCTTCAAGATTAGATCAATCAAAAGTCAGTAATCTAGGCCCATTCCAACAACTGTCTATGCAGCAGTCTACAAATGCAGTCTTGTCAAATGGGCAATGGGATGGGTGGAATGAAGTGCAGAGTGGAAATGGTTTGGGTGTGGCCGAGCTTCTGAGAAATGAAAGACTAGGGTTCAATAAATTTTACTCGGGATATGATGATTCAAAATTTCGGATGCCAAATTCTGGGGATCTTTACAACAGAACATTTGGGATGTGA 3180 0.4129 MGTLGTQTLNPVVVLTKQGVERLNSQYHICGVVLFSHMLSRAIMSDKGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVNEVNMEKKMKTQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRQSGNVLPPPLDDDMNTTSAKPIVKNPSSNSVSTARGSPPNGIYERQVTLPASAAWATQASNCQPPAGGLSYPNGPSKPKPDTGSCTLAFSAAVTGSIQASDVTKRPPSSDGSHSMATRVKSELLKPVKQYNSADSLVSAREKSSSLNVSPVPVNLNGQLSSLLLSRDSDGNCTTANTLNSTNMTGQSCNSVPEEAMPATNEEILNLSIELSSISIDGNAEHCGITKPNSPPTDYVLIKSPQNQGSQYDVNRFRDATTTNMAGKATSDIMACNSREQCDWKLDSQSLVVSDATEFDDDVTSFDNQRLKDPEVVCHSYLPKSTSFLHVSNLSSPCLLQHGERCTAMNAGSVSADESILNASNILCNGHPEKLVSSSSYGLLNDERNGHSIQRLVGDTVNPGHDVTMDKGESSIISNILSMDFDAWDDSLTSPHNLAKLLGDKTDNQSGPLNKSSSWKVHSNNQSRFSFARQDESKIQLFDAHASYGVSHQRPNRAVFQNFTERDLYMDKLGIANGFPTSNFEEAENMASGHSFSSNKLSAISRAQVSAPPGFSIPSRPPPPGFSSHERVEQAFDSISGNSLLDHSSLLRNSCQSPSAGNLGGAGDIEYMDPAILAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLSPQQNHRFSEIGNAFSQLGDSYAVSSRLDQSKVSNLGPFQQLSMQQSTNAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01423 1059 MobiDBLite consensus disorder prediction 315 334 - -
Spst11g01423 1059 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 233 IPR000504 GO:0003723
Spst11g01423 1059 SUPERFAMILY RING/U-box 41 109 - -
Spst11g01423 1059 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 120 IPR013083 -
Spst11g01423 1059 ProSiteProfiles Zinc finger RING-type profile. 52 100 IPR001841 -
Spst11g01423 1059 SMART rrm1_1 154 235 IPR000504 GO:0003723
Spst11g01423 1059 Pfam RING/Ubox like zinc-binding domain 52 104 - -
Spst11g01423 1059 CDD mRING-HC-C4C4_CNOT4 51 101 IPR039515 -
Spst11g01423 1059 SUPERFAMILY RNA-binding domain, RBD 147 233 IPR035979 GO:0003676
Spst11g01423 1059 MobiDBLite consensus disorder prediction 392 411 - -
Spst11g01423 1059 MobiDBLite consensus disorder prediction 315 338 - -
Spst11g01423 1059 Gene3D - 154 235 IPR012677 -
Spst11g01423 1059 CDD RRM_CNOT4 148 247 IPR034261 -
Spst11g01423 1059 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 44 1053 IPR039780 GO:0004842|GO:0030014
Spst11g01423 1059 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 44 120 - -
Spst11g01423 1059 SMART rrm2_1 154 235 IPR003954 GO:0003676
Spst11g01423 1059 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 239 IPR000504 GO:0003723
Spst11g01423 1059 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 154 235 - -
Spst11g01423 1059 MobiDBLite consensus disorder prediction 840 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01423 Spst-Chr11 38632666 38640114 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01423 K10643 - gmx:100801880 1772.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01423 11 38632666 38640114 Spst5g00586 5 4890067 4898350 PCT