Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00579 ATGATGCTGAGAGGAAGCAACAACTTGATCTGTCTACTAAACTTCTTTATCTTGGTGTTGTCAGTTCCAATCCTGGGAGGTGGGATATGGCTGAGCACCAGATCCAACGGCACAGAATGTCTCAAGTTCCTTCAGTTGCCATTGATCATCGTAGCAGTCAGCATCATGGTGACTTCCTTAGCGGGTTTAACCGGTGCTTGTTACCGCAACAACTTACTCATGACCCTCTACCTCGTTGCCCTGATCTTCATAATGATGGTGTTCCTCGGATTCATCATCTTTGCCTATGCTGTCACGAGTAAGGGTTCAGGAAAGGTGACACAGAACCGCGCTTACTTGGAGTATTACCTGCAGGATTACCAGGGTTGGTTGAAGGAACGCGTGGCAAGTGATAAATACTGGACAAAACTTAGCTCTTGCGTTAGAGACTCTAAAGTTTGTGAGAAACTTGGGAGAAACATTAATGGGGTGCCAGAAACTGCAGACATATTCTACTTCAGAAACCTCTCCCCTATTCAGTCTGGATGCTGCAAGCCCCCGACAGAGTGTGGCTACAGTTACGAGAACGAGACGATGTGGAGCCCTGGAAGCGCGGTTGTGGGAAGCAACCAAGACTGCGGAAGGTGGAGCAATGACCAAACCTTGCTTTGCTATGAATGTGACTCTTGCAAGGCTGCTTTGCTTGCTACATTCAAGATACGTTGGAGAAAGGTTTCTCTGATCAATATCGCTCTGTTCATTCTCCTTCTCGTTCTTTACATTGTTGCTTATGCAGCGTATAGGAACAATCGCAGGATAAATAACTGCGAACCCTGCGGTCAAACAAAGATCACGAAGGCACGACCTACCTAG 852 0.4695 MMLRGSNNLICLLNFFILVLSVPILGGGIWLSTRSNGTECLKFLQLPLIIVAVSIMVTSLAGLTGACYRNNLLMTLYLVALIFIMMVFLGFIIFAYAVTSKGSGKVTQNRAYLEYYLQDYQGWLKERVASDKYWTKLSSCVRDSKVCEKLGRNINGVPETADIFYFRNLSPIQSGCCKPPTECGYSYENETMWSPGSAVVGSNQDCGRWSNDQTLLCYECDSCKAALLATFKIRWRKVSLINIALFILLLVLYIVAYAAYRNNRRINNCEPCGQTKITKARPT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00579 283 Pfam Tetraspanin family 8 256 IPR018499 GO:0016020
Spst5g00579 283 PRINTS Transmembrane four family signature 8 31 - -
Spst5g00579 283 PRINTS Transmembrane four family signature 68 96 - -
Spst5g00579 283 PRINTS Transmembrane four family signature 41 67 - -
Spst5g00579 283 PANTHER TETRASPANIN-8-RELATED 4 266 IPR044991 GO:0009734|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00579 Spst-Chr5 4824330 4827869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00579 3 278 Miscellaneous Gene Families AT5G60220 60.145 4.36e-116 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00579 - - gmx:100820399 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00579 5 4824330 4827869 Spst5g00579 5 4824330 4827869 ECH
Spst5g00579 5 4824330 4827869 Spst11g01412 11 38510514 38514131 PCT