Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00554 ATGCGAATCCTCCTCCTCCTCTCCCTCGCCACGCTGCTCCTCTTCTCCTCCTTCTCTCCCACCCTCTGCGCCGACGACGACAACGAAGATCTCAGTTTCCTCGAAGACGAGCCCTCCACGCCCGGCCACAATCATCACTTCGCCGATGACGCAAGCTACGGAGACTTCGACGACTTCGAGGACGACGCCGAACCCTACAAGCAGCCTGAGGTTGACGAGAAAGACGTCGTCGTTTTGAAGGACAAGAATTTCAGCGAAATCGTCAAGAATAACCGCTTCGTCATGGTTGAATTCTACGCGCCGTGGTGCGGCCACTGCCAGGCCCTCGCGCCGGAGTACGCCGCCGCAGCCTCCGAGCTCAAGGGCGAAAATGTCATTTTGGCAAAGGTGGATGCCACGGAGGAGAATGAATTGGGGCAGCAGTACGATGTGCAGGGTTTCCCCACTATCTACTTCTTTCTTGATGGCATTCACAAACCTTATAATGGCCAAAGGACCAAGGATGCTATAGTGACGTGGATTAAGAAGAAGATTGGACCTGGTATATATAACTTGACTACCTTGGAGGATGCTCAACGTATTTTGACCAACGAAACTAAAGTTGTTTTGGGCTTCCTCAATTCTTTAGTTGGTCCTGAGAGTGAGGAGCTTGCTGCCGCTTCAAGAATTGAGGATGATGTCAACTTTTATCAAACCGTGAATTCTGACGTGGCAAAGCTTTTCAATATTGACCCCGATGCGAAGCGCCCCGCTTTGATCCTCGTCAAGAAGGAGGAGGAAAAACTTAACCACTTTGATGGCAAATTTGAGAAGTCTGCAATAGCGGACTTTGTCTATTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCAGCAGTCTTTGAAAATCCAATCAAGAAACAGTTGTTGCTGTTTGCGACATCAAATGATTCGGAGAAGTTCATCCCGGTATTTCAAGAAGCAGCAAAATCGTTCAAGGGAAAGTTGATCTTTGTATATGTGGAACTGGATAATGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGGAATGCTCCAAAAGTACTTGGATACACTGGGAATGATGATGGGAAAAAATTTGTGCTTGATGGCGAGGTGACTGCTGACAGAATTAAGGCATTTGGGGAAGATTTTCTCGAAGACAAGCTAAAACCATTTTACAAGTCAGATCCAATTCCTGAAAGTAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAAGCACTGGAGCCAATATATGACAAGCTTGCAAAACATCTTAGTAGCATTGAGTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGCCTGATGGATTCCCCACTCTTCTCTTCTTCCCAGCAGGAAACAAGAGTTTTGACCCTATTACTGTTGATACAGATCGTACTGTGGTAGCCTTCTACAAGTTCATCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTACTCAACCCGAGAGCTCTGACGCCAAGGGGAACACTGGTGCCAAAGATAGCCAGAGTAGCAATAGTGATGTGAAGGATGAATTATGA 1683 0.4605 MRILLLLSLATLLLFSSFSPTLCADDDNEDLSFLEDEPSTPGHNHHFADDASYGDFDDFEDDAEPYKQPEVDEKDVVVLKDKNFSEIVKNNRFVMVEFYAPWCGHCQALAPEYAAAASELKGENVILAKVDATEENELGQQYDVQGFPTIYFFLDGIHKPYNGQRTKDAIVTWIKKKIGPGIYNLTTLEDAQRILTNETKVVLGFLNSLVGPESEELAAASRIEDDVNFYQTVNSDVAKLFNIDPDAKRPALILVKKEEEKLNHFDGKFEKSAIADFVYSNKLPLVTIFTRESAPAVFENPIKKQLLLFATSNDSEKFIPVFQEAAKSFKGKLIFVYVELDNEDVGKPVSEYFGISGNAPKVLGYTGNDDGKKFVLDGEVTADRIKAFGEDFLEDKLKPFYKSDPIPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYDKLAKHLSSIESLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFIKKHASIPFKLQKPTSTTQPESSDAKGNTGAKDSQSSNSDVKDEL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00554 560 ProSitePatterns Thioredoxin family active site. 434 452 IPR017937 -
Spst5g00554 560 PANTHER PROTEIN DISULFIDE ISOMERASE 4 557 - -
Spst5g00554 560 ProSiteProfiles Thioredoxin domain profile. 57 179 IPR013766 -
Spst5g00554 560 FunFam protein disulfide-isomerase A2 178 282 - -
Spst5g00554 560 CDD PDI_a_family 77 174 - -
Spst5g00554 560 ProSitePatterns Thioredoxin family active site. 95 113 IPR017937 -
Spst5g00554 560 Gene3D Glutaredoxin 409 522 - -
Spst5g00554 560 NCBIfam protein disulfide-isomerase domain 79 177 IPR005788 GO:0003756
Spst5g00554 560 SUPERFAMILY Thioredoxin-like 410 521 IPR036249 -
Spst5g00554 560 CDD PDI_a_PDI_a'_C 414 516 - -
Spst5g00554 560 Gene3D Glutaredoxin 61 181 - -
Spst5g00554 560 Gene3D Glutaredoxin 182 278 - -
Spst5g00554 560 Pfam Thioredoxin 76 176 IPR013766 -
Spst5g00554 560 Pfam Thioredoxin 414 499 IPR013766 -
Spst5g00554 560 MobiDBLite consensus disorder prediction 526 560 - -
Spst5g00554 560 MobiDBLite consensus disorder prediction 526 551 - -
Spst5g00554 560 SUPERFAMILY Thioredoxin-like 69 179 IPR036249 -
Spst5g00554 560 ProSiteProfiles Thioredoxin domain profile. 392 521 IPR013766 -
Spst5g00554 560 Gene3D Glutaredoxin 279 408 - -
Spst5g00554 560 NCBIfam protein disulfide-isomerase 74 560 IPR005792 GO:0003756
Spst5g00554 560 CDD PDI_b'_family 303 393 - -
Spst5g00554 560 FunFam Protein disulfide-isomerase 409 522 - -
Spst5g00554 560 FunFam Protein disulfide-isomerase 65 177 - -
Spst5g00554 560 SUPERFAMILY Thioredoxin-like 183 293 IPR036249 -
Spst5g00554 560 FunFam Protein disulfide-isomerase 283 408 - -
Spst5g00554 560 PRINTS Thioredoxin family signature 94 102 - -
Spst5g00554 560 PRINTS Thioredoxin family signature 102 111 - -
Spst5g00554 560 PRINTS Thioredoxin family signature 143 154 - -
Spst5g00554 560 SUPERFAMILY Thioredoxin-like 281 411 IPR036249 -
Spst5g00554 560 CDD PDI_b_family 182 281 - -
Spst5g00554 560 Pfam Thioredoxin-like domain 217 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00554 Spst-Chr5 4511104 4514961 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00554 K09580 - gmx:100804924 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00554 5 4511104 4514961 Spst5g00554 5 4511104 4514961 ECH
Spst5g00554 5 4511104 4514961 Spst11g01362 11 38119495 38131137 PCT