Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00548 ATGTACAAGAACCAGCTTCAAGAGCTGGCCCAGCGGAGCTGCTTCAACCTGCCTTCCTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCCAGGTTCAAGGCCACCGTCAACTTTAACGGCGAGATCTTCGAGAGTCCTCACTACTGCTCCACTCTCCGTCAGGCCGAACACTCCGCCGCCGAAGTTGCTCTCAATTCCCTCTCCCACCGTGGTCCCTCCCACTCCCTCGCTGCCAAGATCCTCGATGAGACTGGAGTGTACAAGAACCTTCTACAAGAAATTGCGCAAAGGGTAGGAGCCCCATTACCTCATTACACAACGTACAGGTCTGGCCTAGGACATTTACCTGTTTTTACTGGGATAGTAGAGCTTGCTGGAATCTCATTTACTGGAGAACCTGCAAAGAATAAGAAACAAGCTGAGAAAAATGCAGCTATGGCAGCATGGTCGGCATTGAAACAATTGGCAAAAGAGACTGCAAGCTCCTCAACGGAACCAGAGAACAATGATGAACTGGAACAGATTACAATAGCGCGGGCTTTACTAAACTACCGTTTGAAGGAAAAGATGACAATGTCTAATCCAAATACTCCCATTTCATTTCATAAAAGGTTTCAGATTCCGAATCCCAGACCAATCAGTTCTCAACCACAGCCAGCCACTTCATCAAAGATCCTTCCCCTAATTTGCCAAAAGACAGCACCTCGAAGTAAGCCATCAGTGGCAACAGCAAATGAAAGTATTCGAAGCAGGCATCCACAGGCTGCAGTGACCAGTGACAATTCCACCCTTCCACCACAGTCTTGTGCTCTAGAAAGCCGAGGGGTACGTCCCCTTAAGTTCCCTGCAGTAGGAGCAGCACCTTATGTTCCTATTCGACAAATGAGATCATCTTGCCAGGGGATTGCACCAGCAGTGACTATAAGGACTGTAGTACCAGCATTTGCTGCACCACCTTGCCCCCCACCTGCCTCAGTGCCATCCCATACTGTAATACGGGCTCCTCCAGTACGAGTTGCTCCTGCAGTCCATATTCGACAAGCTGTTCCTGTATATGCTGCTCCACCTCCTAGAAGGGATGAATCTGCTCCCATACAAAAGGATCTACCAATTGCTAGTGCCCCCTGCCAGCAAGATAAACAGCCAATTAAAATTCAAGTGACGGACAAGGCTGAGAACATACCACCAGAATCAGAGACTATGGGTATCTTGGAGGAGCTGAAAATTTGA 1233 0.4907 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFTGIVELAGISFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASSSTEPENNDELEQITIARALLNYRLKEKMTMSNPNTPISFHKRFQIPNPRPISSQPQPATSSKILPLICQKTAPRSKPSVATANESIRSRHPQAAVTSDNSTLPPQSCALESRGVRPLKFPAVGAAPYVPIRQMRSSCQGIAPAVTIRTVVPAFAAPPCPPPASVPSHTVIRAPPVRVAPAVHIRQAVPVYAAPPPRRDESAPIQKDLPIASAPCQQDKQPIKIQVTDKAENIPPESETMGILEELKI 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00548 410 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Spst5g00548 410 Pfam Double-stranded RNA binding motif 88 152 IPR014720 -
Spst5g00548 410 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Spst5g00548 410 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Spst5g00548 410 Gene3D - 84 155 - -
Spst5g00548 410 FunFam Double-stranded RNA-binding protein 2 1 70 - -
Spst5g00548 410 PANTHER - 1 358 - -
Spst5g00548 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Spst5g00548 410 SMART DRBM_3 2 69 IPR014720 -
Spst5g00548 410 SMART DRBM_3 88 154 IPR014720 -
Spst5g00548 410 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Spst5g00548 410 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Spst5g00548 410 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Spst5g00548 410 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Spst5g00548 410 Gene3D - 2 83 - -
Spst5g00548 410 MobiDBLite consensus disorder prediction 237 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00548 Spst-Chr5 4466401 4468613 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00548 - - gmx:100815739 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00548 5 4466401 4468613 Spst5g00548 5 4466401 4468613 ECH
Spst5g00548 5 4466401 4468613 Spst11g01353 11 38036282 38039223 PCT