LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst11g01353	ATGTACAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGCTTCAACCTGCCTTCGTACACGTGCATTCGAGAAGGTCCCGATCACGCGCCGCGCTTCAAGGCCACCGTTAATTTCAACGGTGAGATCTTCGAGAGCCCTCAGTACTGCTCCACCCTGCGTCAGGCGGAGCACTCCGCCGCTGAGGTCGCGCTCAATTCACTCTCCAACCGTGCTCCTTCTCACTCCCTCGCCGCCAGGATCCTCGATGAAACGGGAGTATACAAGAACCTCTTGCAGGAAATTGCACAGAGGGTAGGGGCGCCATTGCCGCAGTACTTTACATTCAGGTCAGGCCTCGGTCATCTTCCTGTATTTACTGGGACAGTAGAGTTAGCTGGAATTATGTTTACTGGTGAACCTGCTAAGAATAAGAAGCAAGCGGAGAAAAATGCAGCTATGGCGGCTTGGTCTTCTCTAAAGCAATTGGCTAAAGAAACTGCAAGGTCTTCTACTGAACCAGAGAACAACGACGAACTAGAACAGATCACTATAGCACGGGCTCTGCGGAACTTCCGACTGAAGGAAAAGATTTCAATGTCAAATCAAAATGCACCAATTCCATTTCCAAAGAAGTTTCAGATTCAAAACCCGAGACCAACCAGCCCTCAGCCTCCTGCTGCTGCTACATCAAAGATTCTTCCCTTAATATGCCAAAAGGCAGCTTCTCGAAGCAGGCATCCTGTTGCAGCATCCCCAGCACCAGCAGCCCGGGACAATTCTGCGATGCCACAACTTTCTGTCACACCAGACAGCCGAGGAATTCGACGCCCTAAGTTCCCTGCTGCTGGAGCTGCACCTTATGTTCCAATTAGACAAATGAGACCTTGCCAGGGAATGGCACCTCCAGTGACGATACGGACTGCAATACCTGTATTCTCTCCACCACCACCACCAGCAGCTGCTGCTGCTGTGTCCCTTCCAGTACTACGAGCTCCTCCTGTTCGAGTTGCACCTCCTGTGACTATTAGGCAAGTTGTGCCAGTATTTGCTGCTCCACCTGTTCGAATAGAAGAACATGTTCCCAGCCTTACCAACCTAGAACCTGTTCCCACCCCAAAAGACGAAGCTCCGACTATTAGTTCCCCTAGTCTGGAAGACAAACTACCAGCTAAAACTCTAGAGACAGAGATCAAGACTGAGAAAATTCCAGCTGAATCTGAGACAGTGCAGAGCTTGGTGCAGCTGAAAATTTGA	1236	0.5057	MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAAEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARSSTEPENNDELEQITIARALRNFRLKEKISMSNQNAPIPFPKKFQIQNPRPTSPQPPAAATSKILPLICQKAASRSRHPVAASPAPAARDNSAMPQLSVTPDSRGIRRPKFPAAGAAPYVPIRQMRPCQGMAPPVTIRTAIPVFSPPPPPAAAAAVSLPVLRAPPVRVAPPVTIRQVVPVFAAPPVRIEEHVPSLTNLEPVPTPKDEAPTISSPSLEDKLPAKTLETEIKTEKIPAESETVQSLVQLKI	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst11g01353	411	MobiDBLite	consensus disorder prediction	196	221	-	-
	Spst11g01353	411	Gene3D	-	84	155	-	-
	Spst11g01353	411	CDD	DSRM_AtDRB-like_rpt1	1	69	IPR044450	GO:0003725
	Spst11g01353	411	MobiDBLite	consensus disorder prediction	196	211	-	-
	Spst11g01353	411	SUPERFAMILY	dsRNA-binding domain-like	2	68	-	-
	Spst11g01353	411	Gene3D	-	2	83	-	-
	Spst11g01353	411	SUPERFAMILY	dsRNA-binding domain-like	88	160	-	-
	Spst11g01353	411	PANTHER	-	1	347	-	-
	Spst11g01353	411	SMART	DRBM_3	88	154	IPR014720	-
	Spst11g01353	411	SMART	DRBM_3	2	69	IPR014720	-
	Spst11g01353	411	MobiDBLite	consensus disorder prediction	359	384	-	-
	Spst11g01353	411	CDD	DSRM_AtDRB-like_rpt2	86	154	IPR044451	GO:0003725
	Spst11g01353	411	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	1	70	IPR014720	-
	Spst11g01353	411	FunFam	Double-stranded RNA-binding protein 2	1	70	-	-
	Spst11g01353	411	MobiDBLite	consensus disorder prediction	237	274	-	-
	Spst11g01353	411	FunFam	Double-stranded RNA-binding protein 2	84	155	-	-
	Spst11g01353	411	Pfam	Double-stranded RNA binding motif	2	68	IPR014720	-
	Spst11g01353	411	Pfam	Double-stranded RNA binding motif	88	153	IPR014720	-
	Spst11g01353	411	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	87	155	IPR014720	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst11g01353	Spst-Chr11	38036282	38039223	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst11g01353	-		-	gmx:100816445	663.685

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst5g00548	5	4466401	4468613	Spst11g01353	11	38036282	38039223	PCT