Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00538 ATGGAGAAAGAAACAGAGATGAAAGTATCCAAGTTCAAGAGGATTTGTGTCTTCTGTGGCAGTAGTCCAGGGAATAAAACTTCTTACAAGGATGCTGCTATTGAGCTTGGAAAGGAATTGGTGTCAAGAAATATTGATCTTGTATATGGAGGGGGCAGCATTGGTTTGATGGGGTTGATTTCTCAGGCTGTCTATGAGGGTGGTCGCCATGTAATTGGAGTTATTCCAAAGACACTTATGCCAAGAGAGCTCACTGGAGAAACAGTGGGGGAAGTGAAGGCAGTAACAGACATGCATCAAAGAAAAGCAGAGATGGCTAAACGCTCTGATGCCTTTATTGCCTTACCCGGTGGGTATGGGACACTTGAGGAACTCCTTGAGGTGATAACATGGGCTCAACTTGGAATCCATGATAAACCGGTGGGATTGCTGAATGTTGATGGATACTACAATACCTTTTTGTCTTTCATTGACAAAGCAGTGGAAGAAGGCTTCATCAGTCCCACTGCTCGCCATATAATTGTATCAGCCCCAACTCCAGAAGAACTTGTCAAAGAAATGGAGGAATATTTTCCACAACATGAAAGAGTTATCCCAAAGTTGAGCTGGGAAAGTGAACAACTACATCAGTGTTCTCATTAA 642 0.4299 MEKETEMKVSKFKRICVFCGSSPGNKTSYKDAAIELGKELVSRNIDLVYGGGSIGLMGLISQAVYEGGRHVIGVIPKTLMPRELTGETVGEVKAVTDMHQRKAEMAKRSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNTFLSFIDKAVEEGFISPTARHIIVSAPTPEELVKEMEEYFPQHERVIPKLSWESEQLHQCSH 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00538 213 Pfam Possible lysine decarboxylase 57 187 IPR031100 -
Spst5g00538 213 SUPERFAMILY MCP/YpsA-like 11 190 - -
Spst5g00538 213 Gene3D - 2 189 - -
Spst5g00538 213 FunFam CASP-like protein 3 189 - -
Spst5g00538 213 PANTHER LOG FAMILY PROTEIN YJL055W 1 210 - -
Spst5g00538 213 NCBIfam Rossman fold protein, TIGR00730 family 13 190 IPR005269 GO:0009691|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00538 Spst-Chr5 4348924 4352402 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00538 K22522 - gmx:100811156 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00538 5 4348924 4352402 Spst5g00538 5 4348924 4352402 ECH
Spst5g00538 5 4348924 4352402 Spst11g01342 11 37931997 37935669 PCT