Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00532 ATGGTAAATGGTGCTTGTTCTAGTCACAGCGCTAAGGATGAACTTAATAAAAGCAGGGTCACGCAAAATGGTGAGAAGGGAAAAATCAAAGCAGATCCTAATGTATCAGATGCAACTGGTCTGAGAAGGTCTGCTAGAGAGACATCATCAAAGAGGATAATTCCTAGTCCTTCAAGCAATCCTAAGTCTGGGCGACTTGAAAAGAGAGCACCTCCAACTCCTGTTGATAACAAGAAATCTGAGTGTTTTGAAAAAGAGAACATGCCAACTCCTTTGAGAAGATCTGGAAGGACTAGGAGTTACACTTCTACTAGTCATTCAGATTATAAAAGCTCAGTTTCATTGACTTCAAACCCTAAGCCAAAGAAAGAGAAGAGTGTGAAGCAGTTGACATTTGAAGCTAAGGAAGTAAGTGAAAATGAGGAACAAGATCCAGGAACACCACAGTTTAAAATAAAGAGAATGACTGCACTTATGTACCGGTCTCTCTTTGAATTATCAAAGAAAGAGCCTAATAAGATTGACAAGTCAAATCAAGGTGGCAACAATGATGGTGGCAAGATTGATGAGTGCTTTGAAGGCAGTCATTCTGATTGTGGTGAAGAAATCTCCAAAAATGATGAACTACCATCTAAAGACAACAAGTTAAAAGAGATGAGAGTTGACTCTGGGTTGAATGGGCCTGTGAACGATTTGGTACAAAATACCATAACTCTAGGTTCATTGGCACCATCAAATGCTGCAACTTATGAGGCAGGTTTGGCACCACGAAGAATATTAGATGAAGATGATTTAATAAGGAACTTTGTTGGGGACAATAGAGGTGAAAAATCGATACCTTCTAAAAGCAAGGAAATAACTGTGGATTTGGATTCAAATATTTCGGCCACATTGGTGAAGGGTGACAATTGTAACTTGATTTCTGATTCTAGTAGCCCATCAAGGATCAGTGGCAAAATTATGGGGACTGACAGTCAATCTAGTGCCACAATTTTTGAGACTGGTTTGGTATCTGAAAGGCTTATGCCTGATTACTGCAGGGAGGAAACACTACAGGTGTTAGTGTCGCACAATTCCATATTGGATGAAGACTTAAACAAGAATAATGCTGGCTATGATAGTAGTGGTGACAAATTGGTACCTTCTAAGAGAAAGGGAATTATGGTGGACATGGATGTAGATGTTTCTGCAACATTGGCGGGTAGCAAGTGCAACTTGGTTCCTGATTGTAGTAGCCCTTCAGGGCTTTGTGGCAATATAATGGGAACTGAAGGTTCACATTCCAAGCGGACAAGGTTGGATTGTCAGCCTACAGTCAGTGAGTCTTGTAACCCTTCTACAACTGAGGTTGGTTGGGTCCTTTGTTCCACATCGTTGATTGAAGATAGAGATTACATTGTTGCAAGCATGCATCAGAAGAATGCCCAAATTGATAATGAAAAAGAAGCTGGTTTATTAAGTAATTCCATTAATAGTGTTCCTCAATCAAAGGAAAGGTTGTCAAGTCATAATACATACAGATGCAAGTCTGACTCCTATAAGTTTGTTGAGTATTGGGTTCCTGTACAAATATCTAATCTGCAGCTTGAACAGTATTGTTCTATTTTACTTTCAAATGCTTCAATTCTGCGCTCCTCATCAAAGGTTGATAGCGTTGAGGCTGTTCATGATGTTCTTATTTTAACCCGAAAGTGTTGTAGTCATCCCTACCTTGTTGGCCCAGAACTGCAACCTTCTCTTAACAAGGGTCTCGGACCAGTTGAGTATCTTGATTTTGATTTAAAAGCAAGTGGCAAGTTGCAACTTCTTGATTCAATGCTTGAGGAGTTGAGAAAAAATGATTTCCGGGTGCTCATTATTTTTCAGGAGTACTTGCCATGGTTGGTCTCATTTGCTTCTGAAGCCCCCATGCTAGCATTGGCACCATCTATGACTTCTATTGGAGGTTCTGCAAGAATTGTAGGAAATTATTTGGAAGACCTAGTTCGACAAAGATTTGGTCCAGATTCATATGAACGGGTTGATAAAAATCTTCAGCCTTCCAAGAGGCAAGCTGCCATGAAGAAATTTAACGACAAGAACAACAGACGATTTGTGTTTTTGTTAGAGACAGCTGCTTGCCTTCCAAGCATCAAATTGTCGTCTGTTGATTCTATTATTATATTTGATAGTGATTGGAACCCAATGAATGATATAAGATTCCTTCAGAAAATAACGCTTGATTCCCAGTTTGAATTTATAAAAATATTCCGTTTATATTCATCTTTTACTGTTGAAGAAAAAGCCTTGATACTTGCGAAGCAATGTAAGTCACTTGACTTCAATTTACAAAACATAAACTGGAGTACCAGTCATATGCTGTTGATGTGGGGTGCTGCTTGTCTATTCGATGAACTGAAAGCTTTTCATGATGGTGAAACTTCTGCATCAAATGTGAAATTCTTGTTTGGGCGACCATTGCTAAAAGAAACAATGCATGAGTTCTCTGGCATAATATCTCAGGATGGAGAACATATTAATCCATGCAACAGTTCAATCTTATTGAAAGTACAGCATAATGGGGCAACATACCAAGGAAGTTTTCCTTTGCTTGGTGAGCTAAACTGTAGGTTACAGGATCAAGAGGCATCCCAAATTTTTTGGACAAAACTTTTGGATGGAAAACAGTGTCAGTGGAAGTACTTAAATAATTCATCTCAGCGGAGCCGGAAGAAAGTTCATCATTTTGATGTTTCAGACAATGGGTCTAATCTTGTAAGTGAAGGAGCAGTAAAGAAGCGGAGAAAAGTTAGCCACAATATTGTTGATCAGCCTTCTTTAAAACCTGAAGATGAAAATTTATTTACTGGAATCAAGGCAGATAAATCTCAAGGGAATAATGTTGATTCTGAGTATAAAACCAGACTGCACGACAAGCCGAGTAGCTTACATCTTTTGCTGAAGCCAGAGATCATAAAGCTTTGTGATTTCCTTCTTCTTCCGGATAACGTGAAGAGCATGATGGATAATTTCCTTGAATATGTTGTGAAAAACCACGATATCAATAGGGAACCGTTTTCAATGTTACAGGCTTTTCAATTATCTCTGTGTTGGATTGCAGCTTCTTTGCTAAAGCACAAACTTGACCCCATTGCTTCTCTTATACAAGATTTGAACTTTGAGTGTAAGAAAGAAGAGGTGGACTACATTTATTCTATGTTGCGTTGTTTGAAGAAAATATTTTTACATCGTACCGGAAATTATTGTGATACTGATTCTCCAAAAGCATCTGAACCATCAAATGGGGCATATTCCTGTACAGGAGTAGAACGAGAGGTTGGATTGTTCAAAAAAGACATGTCTAAAAGTATCAAAGAAATTCAGAAGAAATGCGAAAAGAAGCTCAAGAAGCTATGCCTTTTGCAAGAGGAAGAGAAGGAAAGATTAAAAGCAGAAATTGAGGAAGAAGAGGCTAAATTTGTGATGGGGCACAAAATAAAGTCAGCGATGATTCGATCCTGCTCTCCCAATGATGTTACAAGAATGGAAAAGCTCAGGATTTTAAATATTCAATACGAAAAAGGAATTGAAGAACTGAAATGTCAGCATGAAACACAACTCAAGGATCTTGAGGACCAGCAATCAGCTGAGAAGCAGAAGTTTCGAGATAAGGAGACTGCTTGGGTAGAAGATGTCAAATCTTGGGCACAAAATGAACTTTTAAAAATAATTGCTTCAAAGGAACATGGGAATGGGGTTGAATCCTTCCAGACTTGTGATCAAGCACAGCCTTACAATGGTCTAAAGCATAATTTTGCAGAAGTAAATGGTCATGATAATAAGGCTAAGGCCATGACAGAGACTGGGACTGAGGATTTACCTTTATCTGATACAAGAATTGCTAACAGGGCCACTGTAAGTTTGTTGGATAGAGAGGAACTTTTAGGACTGCCTGGGATTATCAATATTTCAGATTCTCCAGAAAACGATACTGCTGCAAATCCTCCTTCTTCCATGGAACAAGAATCTGATGGAGATATCGTGAATGAATCTTCATATAGAGAATTAAGACCGAGTAATGGTCCTGATAACAACACACTTTCGAGACCTTGGGACCTAATCTCTGGAGACCCATCAAGCATACTTAATGGACATATTCCAGATGAAGAACAAGAACCCAGTAATGAACTTGACACGGTCTGTATACTGGAAAGAGATGTACCTCTGGAAACAGGTGAGAAGGTCAATTTTACTGATTGTCCACAGAATGCATCTCCTTTGAATCCCCCGACGTCTATCTCTCAAATGTCTGATGTAGGTCAACCAGAGGTCCCAGGTTTAGATAGAGTTTTATCACCAAGGACTTGTCAAGCTGCTAGTTCAAGTGATGAAGGTCCAAATGCGATGTCAATTTCAAATCTACTTCTGGAGCAACAACCTACTGATGGAATCCCTTTGAATACTCCAGCAGCGGCTGATTGTCATGATGATATAGAGCATTTAACAAATGCCGTGTTGGTGGATAAAAGGACCTCATCAGAAAAGCAGGAAGGAGCACCTAAACCCATGGCAGAATTGTCCCGAGAGTCTCCAGTATCCAGAACAGTTAATGTCATGGATCCTCCAGAACAAGTGGAGCAATTATCTGTAGGATCCACCCCTGACCATGATACATGTCAGGAGTTGCAGCATTCTTCCCAACAACCTGAACTGGTATCTAGTACAGTTGATGTTGTGCCAGCCTCCAATCAGGTTTCACTGATTGTGAAGCCTGTAAATCAGGTGCAACAATTACCATCTGCAGAGCTCCCTTCTTCCCACCTGAATTCAACTAATTTTCCTTTGGCCACTGAATTTGAACATCAGCTAACTGTGGTTCCTAATCAAGACATGCAATCTAACTCAAACTTAGTACGTTATTCACATTCACCTGAAGTTGTGCACCCTGCCTCAAATCCAGACCCTAATACAGTTATACCTAGTGAAGTAAGAATACCTGCGAACGCAATAAATTCGTCAAGTCCTTTGGAGATCAATTATCAACATATGCAAGCTGAAACTCATTCAGCTTCCAGAATTATGCATTTGAGCTATGATCCATTAAAAATTGAATTGGATAGAATACAAAAAGTAACAGATCAAACCATGAAAAGCTATGGAGAAAAGTTGCAAACTGAATTTGAAAAGGAATTAGAGGAACTCCGCAGGAAGTACGAAATTAAAATTCAAGGAATAGAAGCTGAATTCGAACAAAGAAAGACTACTCTGGATACGAGTCTTAATGTAGTTCGTATGAATAAGTTTTTGGCAGATGCTTTTAGGACTAAATGCTCAACTGTTAAACCATCATCTACATCAGGAACGCAGCAAGATTCAAGTTTTTCACAGCAGCAATTGCTTCAGCCTTCAAGACAACAAAATGCTAGTCGGCCATCCCTGGTCGCTGGTTCTTCCTGTGGTCGCTCTGCGACCAATCGGCAGAGTCCCTCCACAACGGCTAGCTCTCAGCTTATGGTACCACCTATACGGGGTGGTTACAGTACTTCAGGATTTCCCTCCAATGTGTCTGCAAGATCACCAATTATCAACACCATCTCTTTGCCAGTAGGAAATCTTCAACCTGGTGGTCAGATACGCGCCCCTGCACCGCATCTCCAGCCATATCGACCATGA 5652 0.3984 MVNGACSSHSAKDELNKSRVTQNGEKGKIKADPNVSDATGLRRSARETSSKRIIPSPSSNPKSGRLEKRAPPTPVDNKKSECFEKENMPTPLRRSGRTRSYTSTSHSDYKSSVSLTSNPKPKKEKSVKQLTFEAKEVSENEEQDPGTPQFKIKRMTALMYRSLFELSKKEPNKIDKSNQGGNNDGGKIDECFEGSHSDCGEEISKNDELPSKDNKLKEMRVDSGLNGPVNDLVQNTITLGSLAPSNAATYEAGLAPRRILDEDDLIRNFVGDNRGEKSIPSKSKEITVDLDSNISATLVKGDNCNLISDSSSPSRISGKIMGTDSQSSATIFETGLVSERLMPDYCREETLQVLVSHNSILDEDLNKNNAGYDSSGDKLVPSKRKGIMVDMDVDVSATLAGSKCNLVPDCSSPSGLCGNIMGTEGSHSKRTRLDCQPTVSESCNPSTTEVGWVLCSTSLIEDRDYIVASMHQKNAQIDNEKEAGLLSNSINSVPQSKERLSSHNTYRCKSDSYKFVEYWVPVQISNLQLEQYCSILLSNASILRSSSKVDSVEAVHDVLILTRKCCSHPYLVGPELQPSLNKGLGPVEYLDFDLKASGKLQLLDSMLEELRKNDFRVLIIFQEYLPWLVSFASEAPMLALAPSMTSIGGSARIVGNYLEDLVRQRFGPDSYERVDKNLQPSKRQAAMKKFNDKNNRRFVFLLETAACLPSIKLSSVDSIIIFDSDWNPMNDIRFLQKITLDSQFEFIKIFRLYSSFTVEEKALILAKQCKSLDFNLQNINWSTSHMLLMWGAACLFDELKAFHDGETSASNVKFLFGRPLLKETMHEFSGIISQDGEHINPCNSSILLKVQHNGATYQGSFPLLGELNCRLQDQEASQIFWTKLLDGKQCQWKYLNNSSQRSRKKVHHFDVSDNGSNLVSEGAVKKRRKVSHNIVDQPSLKPEDENLFTGIKADKSQGNNVDSEYKTRLHDKPSSLHLLLKPEIIKLCDFLLLPDNVKSMMDNFLEYVVKNHDINREPFSMLQAFQLSLCWIAASLLKHKLDPIASLIQDLNFECKKEEVDYIYSMLRCLKKIFLHRTGNYCDTDSPKASEPSNGAYSCTGVEREVGLFKKDMSKSIKEIQKKCEKKLKKLCLLQEEEKERLKAEIEEEEAKFVMGHKIKSAMIRSCSPNDVTRMEKLRILNIQYEKGIEELKCQHETQLKDLEDQQSAEKQKFRDKETAWVEDVKSWAQNELLKIIASKEHGNGVESFQTCDQAQPYNGLKHNFAEVNGHDNKAKAMTETGTEDLPLSDTRIANRATVSLLDREELLGLPGIINISDSPENDTAANPPSSMEQESDGDIVNESSYRELRPSNGPDNNTLSRPWDLISGDPSSILNGHIPDEEQEPSNELDTVCILERDVPLETGEKVNFTDCPQNASPLNPPTSISQMSDVGQPEVPGLDRVLSPRTCQAASSSDEGPNAMSISNLLLEQQPTDGIPLNTPAAADCHDDIEHLTNAVLVDKRTSSEKQEGAPKPMAELSRESPVSRTVNVMDPPEQVEQLSVGSTPDHDTCQELQHSSQQPELVSSTVDVVPASNQVSLIVKPVNQVQQLPSAELPSSHLNSTNFPLATEFEHQLTVVPNQDMQSNSNLVRYSHSPEVVHPASNPDPNTVIPSEVRIPANAINSSSPLEINYQHMQAETHSASRIMHLSYDPLKIELDRIQKVTDQTMKSYGEKLQTEFEKELEELRRKYEIKIQGIEAEFEQRKTTLDTSLNVVRMNKFLADAFRTKCSTVKPSSTSGTQQDSSFSQQQLLQPSRQQNASRPSLVAGSSCGRSATNRQSPSTTASSQLMVPPIRGGYSTSGFPSNVSARSPIINTISLPVGNLQPGGQIRAPAPHLQPYRP 1883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00532 1883 MobiDBLite consensus disorder prediction 1410 1432 - -
Spst5g00532 1883 Gene3D - 516 772 IPR027417 -
Spst5g00532 1883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 768 IPR027417 -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 1772 1838 - -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 1317 1339 - -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 1410 1434 - -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 12 32 - -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 1502 1528 - -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 69 92 - -
Spst5g00532 1883 Coils Coil 1175 1220 - -
Spst5g00532 1883 Gene3D - 489 515 IPR038718 -
Spst5g00532 1883 PANTHER HELICASE PROTEIN MOM1 4 1883 IPR039322 GO:0031507
Spst5g00532 1883 Gene3D - 1691 1769 - -
Spst5g00532 1883 Coils Coil 1110 1152 - -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 1 152 - -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 121 148 - -
Spst5g00532 1883 CDD SF2_C_SNF 597 732 - -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 169 193 - -
Spst5g00532 1883 Coils Coil 1721 1741 - -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 1313 1339 - -
Spst5g00532 1883 ProSiteProfiles SARAH domain profile. 1698 1745 IPR011524 GO:0007165
Spst5g00532 1883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 602 787 IPR001650 -
Spst5g00532 1883 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00532 Spst-Chr5 4288609 4315366 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00532 - - pvu:PHAVU_005G133500g 2410.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00532 5 4288609 4315366 Spst5g00532 5 4288609 4315366 ECH
Spst5g00532 5 4288609 4315366 Spst11g01333 11 37847775 37859751 PCT