Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00504 ATGAAGGGAAAAGGATTGAAAACTATCTTCTTTCATAAATCGTTGTTGAGATTTGATCTTGTTGCCTTTTATGATAAGCAGAAGACCATGAGCAGAAAGCATAGAGAAAAACACCCACAAGTTTATTGTAAGGTTACATCATGGAAGGTTTCCAAGGTTGTAGATGTTGCAGACACAATGAACTATCTTACACTACAGTTGCTAGAAAATATTAGAGGACGTTTTTCTCTTTATCATATGCTTTGTCCAAGTGTTGTGTGTTATCGCCGTTTTTGGCACTGTGGGGCCACCAAATCCCTCTATATAATAACAGTGTACTCGTACTCTTCATTAGCACAACCAACTACCCTTTTGATCTTCTGTCCCAACCTGCATCTTAGCAGAGCCACTCAGGTTACTACAATGCCATTTCTACCTTTGTCTTTCTTCCACATGGATCTTCTCTTCTCTCTTCTTTTATTCTCAATCGTGATTCGTTATAGTACTGCTCAGGGTCCACCTTCCCCTGGCTACTACCCCAGTTCCAAAATTAGTCCTGTTACCTTTGGTGAGGGATTTAGAAACCTTTGGGGACCTCAGCATCAGAAACTAGACCAAGACTCATTAACAATCTGGCTTGACACTTACACAGGGAGTGGATTCAAGTCACTTCGCTCTTACCGATCTGGATACTTTGGTGCTGCGATTAAGCTTCAACCTGGTTATACTGCAGGAGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCCGGAAACCATGATGAAATAGACATTGAGTTCCTTGGTACCACGCCAGATAAGCCATATATCTTGCAGACAAATGTATACATTAGAGGAAGTGGAGATGGGAATATCATAGGGAGAGAGATGAGGTTTCACCTTTGGTTCGACCCAACAGAAGATTTTCACAACTATGCCATTCTATGGGAACCCACTGAGATCATATTTTTGGTGGATGATGTCCCAATAAGAAGGTATCCTAGGAAGAGTGACGCCACTTTCCCCACAAGAGAAATGTATGTGTACGGATCTATATGGGATGCATCTTCATGGGCTACAGAGGGTGGAAAATACAAAGCTGATTATAAATACCAACCCTTCACTGGTCAATACAAAAACTTCAAACTTCAAGGTTGCACCACAGAAGCCACCACCTCATGCCAGCCACCATCACCCTCACCATCAGGCTATGGAAGCCTGAGCCCTCAGCAACTTGCTACAATGCAATGGGTCCAAAACAACCACTTGGTCTATGACTATTGCCATGATCCTGGGAGAGACCATACCCTTACTCCAGAATGCTAA 1311 0.4241 MKGKGLKTIFFHKSLLRFDLVAFYDKQKTMSRKHREKHPQVYCKVTSWKVSKVVDVADTMNYLTLQLLENIRGRFSLYHMLCPSVVCYRRFWHCGATKSLYIITVYSYSSLAQPTTLLIFCPNLHLSRATQVTTMPFLPLSFFHMDLLFSLLLFSIVIRYSTAQGPPSPGYYPSSKISPVTFGEGFRNLWGPQHQKLDQDSLTIWLDTYTGSGFKSLRSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDYPGNHDEIDIEFLGTTPDKPYILQTNVYIRGSGDGNIIGREMRFHLWFDPTEDFHNYAILWEPTEIIFLVDDVPIRRYPRKSDATFPTREMYVYGSIWDASSWATEGGKYKADYKYQPFTGQYKNFKLQGCTTEATTSCQPPSPSPSGYGSLSPQQLATMQWVQNNHLVYDYCHDPGRDHTLTPEC 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00504 436 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 176 436 IPR044791 GO:0004553
Spst5g00504 436 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 106 373 IPR000757 GO:0004553|GO:0005975
Spst5g00504 436 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 401 436 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Spst5g00504 436 FunFam Xyloglucan endotransglucosylase/hydrolase 169 436 - -
Spst5g00504 436 SUPERFAMILY Concanavalin A-like lectins/glucanases 181 436 IPR013320 -
Spst5g00504 436 Pfam Glycosyl hydrolases family 16 184 365 IPR000757 GO:0004553|GO:0005975
Spst5g00504 436 Gene3D - 162 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00504 Spst-Chr5 3979396 3982317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00504 145 436 Glycoside Hydrolase AT3G44990 66.438 2.27e-139 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00504 K08235 - gmx:100796768 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00504 5 3979396 3982317 Spst5g00504 5 3979396 3982317 ECH
Spst5g00504 5 3979396 3982317 Spst11g01295 11 37370406 37372102 PCT