Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01295 ATGCCATCATCACTATCCTCTTTCCTCCATATGGTTCCTCTTCTCTCCCTTCTTGTACTCTCATGTATGATTTGTTCTGTTTGTTCTCAGGGACCACCTTCACCTGGTTACTACCCCAGTTCCAAAATTAGTCCTATTAGCTTTAATCAAGGGTTTAGAAACCTTTGGGGACCTCAGCATCAGAGAATAGACCAAGACACATTGACAATATGGCTAGACACTAGCACAGGGAGTGGATTCAAGTCACTTCACTCTTATAAATCTGGATACTTTAGTGCTGCAATTAAGCTTCAACCCGGTTACACTGCGGGAGTCATTACATCTCTCTACCTTTCAAATAACCAAGACCACCCCGGAAACCATGATGAAATTGACATAGAGTTCCTTGGTACCACGCCAGATAAGCCATATGTGTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAATATTATAGGAAGAGAGATGAGGTTTCATCTCTGGTTTGACCCAACACAGGATTTTCACAACTATGCCATTCTATGGAAACCCACTGAATTAATATTTTTTGTGGATGATGTCCCAATAAGAAGGTATCCAAGGAAAAGTGAGGCCACATACCCTTCAAGGCCAATGTATGTGTATGGGTCAATATGGGATGCATCTTCTTGGGCAACAGAGGGTGGAAAATACAAAGCTGATTATAGATACCAACCCTTCATTGGTAGGTACAGAAACTTCAGACTTGAAGGTTGCACTAGTGAAAGTTCTCCCTCATGCCATCCACCTTCTGCATCTCCATCTGGGTTTGGAAGTCTGAGCCCTCAGCAGTTTAGGGCAATGCAATGGGTCCAAAACAACTACATGGTGTACAACTACTGCCATGACCCTAGGAGAGACCACAATCTTATCCCAGAATGTTGA 909 0.4301 MPSSLSSFLHMVPLLSLLVLSCMICSVCSQGPPSPGYYPSSKISPISFNQGFRNLWGPQHQRIDQDTLTIWLDTSTGSGFKSLHSYKSGYFSAAIKLQPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTQDFHNYAILWKPTELIFFVDDVPIRRYPRKSEATYPSRPMYVYGSIWDASSWATEGGKYKADYRYQPFIGRYRNFRLEGCTSESSPSCHPPSASPSGFGSLSPQQFRAMQWVQNNYMVYNYCHDPRRDHNLIPEC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01295 302 PIRSF EndGlu_transf 8 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Spst11g01295 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
Spst11g01295 302 Gene3D - 28 302 - -
Spst11g01295 302 Pfam Glycosyl hydrolases family 16 49 231 IPR000757 GO:0004553|GO:0005975
Spst11g01295 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Spst11g01295 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 47 302 IPR044791 GO:0004553
Spst11g01295 302 FunFam Xyloglucan endotransglucosylase/hydrolase 35 302 - -
Spst11g01295 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 27 239 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01295 Spst-Chr11 37370406 37372102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01295 15 302 Glycoside Hydrolase AT3G44990 67.010 2.20e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01295 K08235 - gmx:100781528 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00504 5 3979396 3982317 Spst11g01295 11 37370406 37372102 PCT