Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00465 ATGCAAATTCTTTCGCCCCCGACTTCCAACGCGCTCAATCTCAAGCACGTTCTTCGCACGCGCAGGCTCGGACCAACCCGAGTCTCTGTGAAATGCGCATACGCATTTGAACCAGCGAGCTACGGAGTCGGCTCGAGCAGAGCCGATTGGCAAAGCTCCTGCGCCATCTTAGCCAGTAAGGTTGTTTCTCAGGAACAATCGCCCTCCGCTGACAACGGCGGCACCGCCGACCACGTGGCTGCAGTCAATGGCCACAAAGCAGCCGTCAGCGACTTCCAACTTGTTCCAATCGGAAACCTCGCGGAGGCCAACAACAAGCCGCTCCCGCCGAAGCCGCTGACAATCTCTGACCTCTCCCCGGCGCCTATGCACGGTTCGAAACTCAGAGTCGCGTACCAGGGCGTTCCCGGCGCGTACTCAGAGGCCGCTGCCGGAAAGGCTTATCCGAACTGCGAAGCCATCCCGTGCGACCAGTTCGAGGTGGCGTTCCAGGCGGTGGAGCTATGGATCGCCGACCGAGCGGTTTTGCCGGTGGAAAATTCCCTTGGCGGTTCGATCCACCGCAACTACGACCTCCTCCTCCGTCACCGCCTCCACATCGTAGGCGAGGTCCAGCTCCCGGTTCACCACTGCCTCCTCGCTCTCCCCGGCATCCGCAAGGAGTTCCTCACGCGCGTGATTTCGCATCCGCAGGCGCTCGCGCAGTGTGAGCACACGCTGACCAAGCTTGGCCTCAACGTGGCGCGCGAGGCCGTGGACGACACCGCCGGCGCAGCGGAATTCGTCGCCACGAACGACCTCCGCGACACCGCCGCCATCGCAAGCGCACGCGCGGCGGAGTTGTACGGCCTGAACGTGATGGCGGACGGCATTCAGGACGATCCAAGCAACGTGACGCGCTTCGTGATGCTGGCGAGAGAGCCTATCATTCCCCGCACGGACCGTCCTTTCAAGACGAGCATTGTTTTCGCGCACGACAAAGGCACCTCCGTGCTTTTCAAAGTGCTTTCCGCGTTTGCGTTTCGGAACATCAGCTTGACAAAGATCGAGTCGCGCCCTCACCGCAACCGTCCGATTCGGCTTGTCGATGACGCAAATGTGGGAACCGCGAAGCACTTCGAATACTTGTTTTACGTTGATTTTGAGGCTTCTATGGCTGAGGTTAGGGCTCAGAACGCTCTAGCGGAGGTGCAGGAATTCACCTCCTTCTTGCGTGTGTTGGGGAGTTACCCCATGGACATGACACCCTGGGCTCCTTCTTCCCGTGGAGATTAG 1275 0.6016 MQILSPPTSNALNLKHVLRTRRLGPTRVSVKCAYAFEPASYGVGSSRADWQSSCAILASKVVSQEQSPSADNGGTADHVAAVNGHKAAVSDFQLVPIGNLAEANNKPLPPKPLTISDLSPAPMHGSKLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGIRKEFLTRVISHPQALAQCEHTLTKLGLNVAREAVDDTAGAAEFVATNDLRDTAAIASARAAELYGLNVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWAPSSRGD 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00465 424 ProSiteProfiles Prephenate dehydratase domain profile. 129 306 IPR001086 GO:0004664|GO:0009094
Spst5g00465 424 FunFam Arogenate dehydratase 313 414 - -
Spst5g00465 424 SUPERFAMILY ACT-like 301 413 IPR045865 -
Spst5g00465 424 Pfam Prephenate dehydratase 130 308 IPR001086 GO:0004664|GO:0009094
Spst5g00465 424 Gene3D - 313 414 - -
Spst5g00465 424 SUPERFAMILY Periplasmic binding protein-like II 129 312 - -
Spst5g00465 424 ProSitePatterns Prephenate dehydratase signature 1. 282 304 IPR018528 GO:0004664|GO:0009094
Spst5g00465 424 FunFam Arogenate dehydratase 212 294 - -
Spst5g00465 424 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 32 420 - -
Spst5g00465 424 FunFam Arogenate dehydratase 124 211 - -
Spst5g00465 424 CDD PBP2_Ct-PDT_like 127 308 - -
Spst5g00465 424 Gene3D - 124 212 - -
Spst5g00465 424 Gene3D - 213 294 - -
Spst5g00465 424 ProSiteProfiles ACT domain profile. 320 411 IPR002912 -
Spst5g00465 424 ProSitePatterns Prephenate dehydratase signature 2. 346 353 IPR018528 GO:0004664|GO:0009094
Spst5g00465 424 CDD ACT_CM-PDT 318 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00465 Spst-Chr5 3675795 3677069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00465 K05359 - gmx:100797636 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00465 5 3675795 3677069 Spst5g00465 5 3675795 3677069 ECH
Spst5g00465 5 3675795 3677069 Spst11g01236 11 36751389 36752672 PCT