Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01236 ATGCATACCCTCACTCCACCTTACCCCAACCCTATCAATTATCTCAACCGGGCATCTCACTCTGTTATTCGGGTCTCGCCGACCCGATTTAGAGTCAAATGCAGTTACGGCTTCGAAACCGCGGGTTTCTCGCAAGGATTCGGTGTCAACCGAGTCGATTGGCAAAGCTCGAATGCCATCTTAGCCAGTAAAGTCATGTCGCAGCAGGAAGATTTTCCCGCCGGCGGCAGCGGCGACAACAACGTGGCCGCGGTAAACGGCAATAACGCTGCCGTAACGAATCTAAATCTCGTACCTGTCAAACAAGAAGGCAACAACAGCAAGCCGCTTCCGCCGAAGCCGCTCTCGATCTCCGACCTCTCCCCGGCGCCGATGCACGGCTCGCAGCTGCGCGTGGCGTACCAAGGAGTTCCCGGCGCGTACTCCGAGGCCGCAGCGGGGAAAGCGTATCCAAACGGGGAAGCCATACCGTGCGACCAGTTCGAGGTGGCGTTTCAGGCGGTGGAGCTCTGGATCGCGGATCGCGCGGTTCTTCCGGTGGAAAACTCCCTCGGCGGCTCGATCCACCGGAACTACGACCTCCTCCTCCGCCACCGCCTCCATATCGTCGGGGAGGTCCAGCTCCCGGTGCACCACTGCCTCCTCGCGCTCCCTGGCGTCCGCAAGGAGTTCCTCACGCGCGTGATCTCGCATCCACAGGCCTTAGCACAGTGCGAGCACTCGCTCACGAAACTCGGCCTCAACGTGGCGCGTGAGGCCGTCGACGACACCGCCGGCGCCGCTGAGTTCGTCGCCGCGAACGGCCTCCGCGATACGGCGGCAATCGCGAGCGCGCGCGCCGCTCAGCTCTACGGTTTGCAGGTCCTCGCGGACGGAATCCAGGACGATCCGAACAACGTGACGCGGTTCGTGATGCTGGCGCGCGAACCGATCATTCCGCGCACGGATCGGCCGTTCAAGACGAGCATCGTCTTCGCTCACGATAAGGGAACTTCGGTGCTTTTTAAAGTGCTTTCCGCGTTCGCGTTTAGAAACATTAGCTTGACGAAGATCGAGTCCAGGCCTCACCGTAGCCGTCCGATTCGCGTGGTTGATGATGAGAGCGAAGGAACCGCCAAACACTTCGAGTATTTGTTTTACATCGATTTTCAGGCTTCTATGGCGGAGGTTAGGGCACAGAACGCCCTCGCTGAGGTTCAAGAATTCACCACTTTCTTGCGAGTGTTGGGGAGCTACCCTATCGATATGACACCGTGGAGCCCCTCTTGTCCCCGCGAAGATTAA 1284 0.5942 MHTLTPPYPNPINYLNRASHSVIRVSPTRFRVKCSYGFETAGFSQGFGVNRVDWQSSNAILASKVMSQQEDFPAGGSGDNNVAAVNGNNAAVTNLNLVPVKQEGNNSKPLPPKPLSISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNGEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALAQCEHSLTKLGLNVAREAVDDTAGAAEFVAANGLRDTAAIASARAAQLYGLQVLADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRSRPIRVVDDESEGTAKHFEYLFYIDFQASMAEVRAQNALAEVQEFTTFLRVLGSYPIDMTPWSPSCPRED 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01236 427 Gene3D - 126 214 - -
Spst11g01236 427 FunFam Arogenate dehydratase 315 416 - -
Spst11g01236 427 ProSitePatterns Prephenate dehydratase signature 1. 284 306 IPR018528 GO:0004664|GO:0009094
Spst11g01236 427 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 35 421 - -
Spst11g01236 427 Gene3D - 315 416 - -
Spst11g01236 427 CDD ACT_CM-PDT 320 413 - -
Spst11g01236 427 ProSiteProfiles Prephenate dehydratase domain profile. 131 308 IPR001086 GO:0004664|GO:0009094
Spst11g01236 427 FunFam Arogenate dehydratase 214 296 - -
Spst11g01236 427 SUPERFAMILY Periplasmic binding protein-like II 131 314 - -
Spst11g01236 427 ProSiteProfiles ACT domain profile. 322 413 IPR002912 -
Spst11g01236 427 CDD PBP2_Ct-PDT_like 131 310 - -
Spst11g01236 427 ProSitePatterns Prephenate dehydratase signature 2. 348 355 IPR018528 GO:0004664|GO:0009094
Spst11g01236 427 Pfam Prephenate dehydratase 132 310 IPR001086 GO:0004664|GO:0009094
Spst11g01236 427 Gene3D - 215 296 - -
Spst11g01236 427 FunFam Arogenate dehydratase 126 213 - -
Spst11g01236 427 SUPERFAMILY ACT-like 303 414 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01236 Spst-Chr11 36751389 36752672 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01236 K05359 - gmx:100809331 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00465 5 3675795 3677069 Spst11g01236 11 36751389 36752672 PCT