Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00436 ATGGGTCAGACCCTTAGTTGCACAGTGAGCCAGGACCACGGCCTCTTCACCGCCGTGCAACACGGTCACCTTCAAACTGTCACCACCCTCTTAGAGGCCGACCCATCTCTCTTGTACCAAACCACTCCCTACGATCGCCACACTCCGCTTCATATTGCCGCAGCCAATGCCCAGATCGAGATTCTGTCTAGGCTTTTGGATGGATCTCTTAACCCAGATGTTTTAAATCGCCACAAACAGACTCCGCTTATGTTGGCAGCAATGCACGGGAACATCGCGTGTGTCGAGAAGCTTCTTCTAGCCGGAGCTAATGTGTTAATGTTTGATACTATTTCCGGGAGAACCTGCTTACACTATGCCGCATACTACGGCCATTCTTCTTGCCTTAAGGCTATTCTTTCTGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTCGTTTTGTGAATATTAGAGATGGAAAGGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGACGGCCTGAATGTGTACATATTCTGTTGGACAGTGGAGCTCTTGTTTGTGCTTCAACTGGTGGATATGGCTGTTCTGGGAGTACTCCGCTTCATCTAGCAGCCAGAGGGGGATCTCTGGATTGCATTCGTGAATTGTTGGCATGGGGTGCAGATCGTCTTCAACGCGATGCATCTGGGCGGATACCATATATGGTTGCTCTGAAACACAAACATGGAGCCTGTGCATCATTGCTGAATCCTACGTCTGCAGAACCTCTTGTCTGGCCGTCTCCGTTGAAGTTCATCAGTGAGCTTAATCCTGAAGCCAAAGCTTTATTGGAACAGGCCTTGATGGATGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGGAGTGCTTACTCTCTTCCATCTCCATCACATTCTGATGGCGTAACTGATGATATGTCTGAGGTTAGTGAGTCCGAGTTATGTTGCATATGCTTTGAGCAGGTATGCACAATCGAAGTTCAGAACTGTGGCCACCAGATGTGTGCACAATGCACACTGGCCCTGTGTTGTCACAACAAGCCCAACCCTGCCACAACCTGTCTCACTCCACCGGTTTGTCCATTCTGCCGAAGCACCATAGCAAGACTGGTGGTTGTGAAGACAGAATGCCATGATGAAACTGATCTAGATAGTGTTGACATCAACTGTTCCAAGCTGAGCAAGTCATCAAAGAAACCCAGAAACTTGAATGACAGTGGTAGCAGCAGCTTCAAGGGCCTATCCACTGTTAGTTCATTCGGGAAGTTGGGTAGCCGCAGCTCTGGAAGGATTGCTGCCGAGTGGGTGGATAAACAGTGA 1335 0.4914 MGQTLSCTVSQDHGLFTAVQHGHLQTVTTLLEADPSLLYQTTPYDRHTPLHIAAANAQIEILSRLLDGSLNPDVLNRHKQTPLMLAAMHGNIACVEKLLLAGANVLMFDTISGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCSGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSAYSLPSPSHSDGVTDDMSEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATTCLTPPVCPFCRSTIARLVVVKTECHDETDLDSVDINCSKLSKSSKKPRNLNDSGSSSFKGLSTVSSFGKLGSRSSGRIAAEWVDKQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00436 444 Gene3D - 145 197 IPR036770 -
Spst5g00436 444 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Spst5g00436 444 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Spst5g00436 444 Pfam Ankyrin repeat 113 134 IPR002110 GO:0005515
Spst5g00436 444 Pfam Ankyrin repeat 158 185 IPR002110 GO:0005515
Spst5g00436 444 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Spst5g00436 444 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Spst5g00436 444 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Spst5g00436 444 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Spst5g00436 444 MobiDBLite consensus disorder prediction 401 430 - -
Spst5g00436 444 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 152 247 - -
Spst5g00436 444 MobiDBLite consensus disorder prediction 401 432 - -
Spst5g00436 444 Gene3D - 198 251 IPR036770 -
Spst5g00436 444 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Spst5g00436 444 SMART ANK_2a 112 142 IPR002110 GO:0005515
Spst5g00436 444 SMART ANK_2a 227 256 IPR002110 GO:0005515
Spst5g00436 444 SMART ANK_2a 10 39 IPR002110 GO:0005515
Spst5g00436 444 SMART ANK_2a 194 223 IPR002110 GO:0005515
Spst5g00436 444 SMART ANK_2a 157 186 IPR002110 GO:0005515
Spst5g00436 444 SMART ANK_2a 78 107 IPR002110 GO:0005515
Spst5g00436 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Spst5g00436 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 378 IPR013083 -
Spst5g00436 444 Gene3D - 6 144 IPR036770 -
Spst5g00436 444 Pfam Ankyrin repeats (many copies) 195 234 IPR002110 GO:0005515
Spst5g00436 444 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Spst5g00436 444 SUPERFAMILY Ankyrin repeat 12 250 IPR036770 -
Spst5g00436 444 SUPERFAMILY RING/U-box 315 374 - -
Spst5g00436 444 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Spst5g00436 444 Pfam Ankyrin repeats (3 copies) 15 108 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00436 Spst-Chr5 3415026 3417623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00436 14 225 Miscellaneous Gene Families AT3G12360 31.944 8.51e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00436 - - gmx:100786708 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00436 5 3415026 3417623 Spst5g00436 5 3415026 3417623 ECH
Spst5g00436 5 3415026 3417623 Spst2g02299 2 22284401 22286847 PCT