Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02299 ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAGCATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGACACTGTCGCAGCTTTGTTACACACACACCCTTCTCTCATGAACCACACCACTGTCTATGATCACCACTCCCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTATCTTTGCTTTTGGATGGATCTGTGAATCCAGATGCGTTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGGAAGATCGCCTGTGTGGAAAAGCTCCTTGAAGCTGGTGCTAATGTATTAATGTTTGATGCGTGTTATGGAAGGACCTGTTTGCACTATGCAGCTTACTATGGCCATTCTTCTTGCCTCAAGGCAATTCTCTCTGCTGCTCAATCTAGTCCTGTGGCTGCATCTTGGGGGTTTTCTCGGTTTGTGAATATTAGAGATGGAAGGGGTGCAACACCATTGCACTTGGCAGCCCGTCAAAGACGGCCTGGATGTGTGCATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACAGGAAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGAGGATCCTTGGATTGCATTAGGGAACTGTTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCCTCTGGGCGGATACCTTATGTAGTTGCTCTGAAACATAGGCACAACGCATGTGCAGCATTGCTGAATCTTTCTTCTGCTGAGCCTCTTGTGTGGCCATCATCTTTGAAGGTGATCAGTGAGCTTAATCCAGAAGCCAAAGAATTATTAGAGCGGGCCCTGATGGACGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGGGAGTGATTACAGTGTCCCATCTCCAGCACACTGTGATGGGATAGATGACAATATTTCTGAGGTTAGTGAGACAGAATTATGTTGCATCTGCTTTGAGCAAGTATGCACAATTGAGGTGCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCTTAACCCTTCTACTTCTCGTATTATCCCACCAGTTTGTCCATTCTGCAGAAGCAGCATAGCAAGATTGGTGGTTGTGAAAAAAGAAATCCCTCATGACATTGATCAAGATGGTGTTGACATCACTTCTTCCAAGCCTAGCAAGTCAAGGAAAACGCGAAACATGAACGAGGGTGGCAGCAGCAGCATCAAGGGCTTATCAAGTGTAAACTCATTTGGAAAGATGGGTGGCCGCAGCTCCGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAGCAGTGA 1344 0.4754 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLHTHPSLMNHTTVYDHHSPLHIAAANGQIQVLSLLLDGSVNPDALNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFSRFVNIRDGRGATPLHLAARQRRPGCVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHNACAALLNLSSAEPLVWPSSLKVISELNPEAKELLERALMDANREREKNILKGSDYSVPSPAHCDGIDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKLNPSTSRIIPPVCPFCRSSIARLVVVKKEIPHDIDQDGVDITSSKPSKSRKTRNMNEGGSSSIKGLSSVNSFGKMGGRSSGKIAAENEWEDDKQQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02299 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Spst2g02299 447 Gene3D - 140 250 IPR036770 -
Spst2g02299 447 Gene3D - 83 139 IPR036770 -
Spst2g02299 447 MobiDBLite consensus disorder prediction 388 447 - -
Spst2g02299 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Spst2g02299 447 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Spst2g02299 447 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Spst2g02299 447 Gene3D - 7 82 IPR036770 -
Spst2g02299 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Spst2g02299 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Spst2g02299 447 MobiDBLite consensus disorder prediction 388 404 - -
Spst2g02299 447 MobiDBLite consensus disorder prediction 405 427 - -
Spst2g02299 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Spst2g02299 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 378 IPR013083 -
Spst2g02299 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Spst2g02299 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Spst2g02299 447 SUPERFAMILY RING/U-box 313 374 - -
Spst2g02299 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Spst2g02299 447 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 81 253 - -
Spst2g02299 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Spst2g02299 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Spst2g02299 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Spst2g02299 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Spst2g02299 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Spst2g02299 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Spst2g02299 447 SMART ANK_2a 227 256 IPR002110 GO:0005515
Spst2g02299 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Spst2g02299 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Spst2g02299 447 Pfam Ankyrin repeats (many copies) 194 232 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02299 Spst-Chr2 22284401 22286847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02299 12 330 Miscellaneous Gene Families AT5G60070 26.627 2.32e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02299 - - gmx:100800611 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00436 5 3415026 3417623 Spst2g02299 2 22284401 22286847 PCT