Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00416 ATGGAAGTGACTGAATTGGCTTCCTTAAGGCTTTCCATTGAGACGAATATGGTATTGCAGAAGAGGTTATATTATAGCTTTAATGGCAATCAGGTGCCAACCAAGCCCCGAGCTACTAGATCAGCTAGGAGGAACTCTACATTTCAAAGAAGGTTGGAAGACAATCAAATGTGTGCATTTGACTTATTGGCCACCGTAGCTGACACTTTATTGCAAGAGAAACAGAATCCAGCCACATCTAGTGATAGATCATTAGAAAAGGATAGGGATGGATTTGTAAAACAGGAGTGCCAGGATGCAAATAAACCATTCAAAACTGAGCTTTCTGATGAAGCAAGTTGTGACAGAAGATGTCAGCAAGAATTTGTTAAAGAAGGATGCCCAGATGCAAATAAACCATTAAAAGCTGAGCTTTCAGACGAAGGAAGTAGTGATAGAAAATGTTTCTCTAATATTTCTTACCAAGTATACAGTCAAAATTGTTGTTTGAAGGAATTCCCCCATCATGAAATGGACGGTCATTCATGCATTGCTTCTATAACAAGTTCTGGTTGCTCAGAGAAGTTTGTTGCTGAAACACTAGTGGATGGGAATGGCCAAAATGAAATGGAAAATTTAGCTAGCAAGGTTGAATTAGGTTCCTCTGGAAGTCCAGATAGTAGTGGTTGCAAGTTAGATGGTGATGTAAATAAAGTAAAAGATGGTAAGTTTGGGAAGGTTCCCGATGATACTGGGACTGGGTTGTGCTGTTCTGAGGATCCCTTGGATGAAAAACCTCCAGCACTAATAAGTTCTTGTGACAATGCCAAGTTGTCTGGGTATGATGACAACAGCATGCCTCATAGCTCATTGTCCAAAGGTTGTGACAATGTAGTAGTAGATAGTAGAGATGATGACGAAAACTTTTCTGGGTGTGCTCACCCTGGTACCAAAATGAAGTCCTTTAGACCAATTACTTGTATAGATGGTAGAAAAATAAAGAAAAGATTGGCTACTAAATATCATAAAGTTGCTCAAGAATCCACGCATGATAAGTTATCTAACAGTGTTTTGGATGGAAATTTGATGCCGGTTTACAGCAGTAGGAAGAACTATTATAAAAGCCAAAGATCTCAGATGAACATTCCTTTTAAAAAGAGGAAGCTTTTCAAATGTAATTCTGATACAAATTCTACCGGATATATCAGAAATGGTGACGCTTATTATTCACCCAAGATTGAAGCGAACCAAAGTGTTTCATGTTCATCTTCTGGGATGGGCAAAGATCATGAAACATCATCCTTGGGACAATCTGCTTTACGATCTCGAGATTCTCATGTGAAGCTTAGGATCAAATCATTTAGAGTGCCCGAGCTTTTTATTGAGATTCCAGAAACTGCAACCATTGGGTCCTTAAAGAGGACAGTGATGGAAGCAGTGACTGCAGTACTCGGAGGTGGATTACGTGTGGGAGTGATTCTCCATGGAAAGAAGGTTAGAGATGACAGTAAAACTCTACTCCAGACTGGAATTTCTCATGATAACCACTTGGATGCTTTGGGATTCGCCTTGGAGCCTAATTCTTCACAAAATATACCACCTGCATGTGCAACTAGTTCTCTTCGCATTCCTAGTGCAAATATGCCTCAACCTTTTATAGGGTATCCTTCAAGTCCTGCTGTGATTCATCAAAGGATTCAGGGCTTTCCTAACATGTTAGCTGAACATCAAGCAACAGGTTTAGGTAACCTTGTCGAAAGTGATCATGATTCAGCACCTTCTCCCATCAACACATCAGGTGAAAAAAAATTGTCATACTCTAAAGAACTTATTACTGTTCCGGAAATGGGTATGGAGGTACTGGCTGTGCAACCTGTGCATCAAAAGTCAAAGCGAACCGAGATCGCACAGCGCCGAATTCGGAGGCCGTTTTCCGTTGCTGAAGTGGAAGCGTTGGTTCAAGCAGTTGAGAAACTTGGAACTGGAAGGTGGCGTGATGTTAAGCTTCGTGCTTTTGAGAATGCAAAGCATCGGACATACGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACAGCAAGAATATCCCCTCAGCAAAGGAGGGGAGAACCTGTTCCTCAAGAACTTTTGGACAGGGTCCTAACTGCTCATGCATATTGGTCCCAGCAGCAGACTAAGCAACAGCTCAAGCACCACCCAAAACCTTGCCTTCTCCTTTAA 2202 0.4128 MEVTELASLRLSIETNMVLQKRLYYSFNGNQVPTKPRATRSARRNSTFQRRLEDNQMCAFDLLATVADTLLQEKQNPATSSDRSLEKDRDGFVKQECQDANKPFKTELSDEASCDRRCQQEFVKEGCPDANKPLKAELSDEGSSDRKCFSNISYQVYSQNCCLKEFPHHEMDGHSCIASITSSGCSEKFVAETLVDGNGQNEMENLASKVELGSSGSPDSSGCKLDGDVNKVKDGKFGKVPDDTGTGLCCSEDPLDEKPPALISSCDNAKLSGYDDNSMPHSSLSKGCDNVVVDSRDDDENFSGCAHPGTKMKSFRPITCIDGRKIKKRLATKYHKVAQESTHDKLSNSVLDGNLMPVYSSRKNYYKSQRSQMNIPFKKRKLFKCNSDTNSTGYIRNGDAYYSPKIEANQSVSCSSSGMGKDHETSSLGQSALRSRDSHVKLRIKSFRVPELFIEIPETATIGSLKRTVMEAVTAVLGGGLRVGVILHGKKVRDDSKTLLQTGISHDNHLDALGFALEPNSSQNIPPACATSSLRIPSANMPQPFIGYPSSPAVIHQRIQGFPNMLAEHQATGLGNLVESDHDSAPSPINTSGEKKLSYSKELITVPEMGMEVLAVQPVHQKSKRTEIAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFENAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQTKQQLKHHPKPCLLL 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00416 733 SUPERFAMILY Homeodomain-like 635 716 IPR009057 -
Spst5g00416 733 Gene3D - 622 726 - -
Spst5g00416 733 CDD SANT_TRF 635 685 - -
Spst5g00416 733 MobiDBLite consensus disorder prediction 413 432 - -
Spst5g00416 733 SUPERFAMILY Ubiquitin-like 435 526 IPR029071 -
Spst5g00416 733 PANTHER TELOMERIC REPEAT BINDING PROTEIN 17 726 IPR031105 -
Spst5g00416 733 ProSiteProfiles Myb-like domain profile. 629 684 IPR001005 -
Spst5g00416 733 SMART sant 633 686 IPR001005 -
Spst5g00416 733 FunFam Telomere repeat-binding protein 1 623 726 - -
Spst5g00416 733 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 629 688 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00416 Spst-Chr5 3318639 3323018 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00416 - - gmx:100780881 1192.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00416 5 3318639 3323018 Spst5g00416 5 3318639 3323018 ECH
Spst5g00416 5 3318639 3323018 Spst1g02225 1 30722684 30727953 ECH
Spst5g00416 5 3318639 3323018 Spst2g02313 2 22456077 22464602 PCT