Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02225 ATGACCGGTATAGACGGTAGCATATACCCTTTAACTGGGTGGTCCGGTTGTGTGGTCAAAACCATGGGATATAAAGGGTTTAAGGCCACTGTTGCGTGGTTTTTGTTTACCGTATTGAAGAGGGTAGATTATGGATTTAGCGGCTTTCGAGTTCCTATTATACCTAAAGCTCCTAGATCTGCAAGGAGAAGGGGTCCTTTCAAAAAAGCAGCCGAGGATGGTAGAGTTTGTGCTATTGAACTACTGGCATCTTTAGCTGGCCAGTTGTTGCAGGAGAGTGAAAGTTCTGCTTCCAGCAACGCATCTGAAGGAAATCATCAACCTACCATTAGCCAAGGTGTCATTGAGCAAGACAGACAAGATGAAGTTAAACCATTAAAAACGGAGGAAATTCACCAGGGAAGTTGCGCTGAGAGTACTGTTAAGACTGAGGTAGTGTCACAAAACAGTAGCCAGAAACCTCTTCCACATGCCAAGATTGATTGTACACTAGGACGTGTTTCAGTTAATAATGATTCTGACTGTTGGGAGAAAGTTGAAGCTGAAGTGAAGTCTGAAATTTTCAAATGGGATAAAAAATTTGGGAATTATTCTAATAGAGTGGTAGAAACACCTGAAAAGTTTAGGGAGTCTAGTGATGGTAACATGAAGAATGGATTTAAACTGGAACAGGAAGCTGGCAGTTCATGCTTTAGGGGAACAAATTTGGCTGATAAATGTAGTTTGAAGGGCCACTTAGAAATTGCTTCCTTTTCCAAGCATGGGAATGGTATTAAATTAGGTTTTAGAGATGATGACGAAAACTTTTTAAGGTGCAAAAAAGTTTGCACAAAGTTGAAGGCTTTTAGGTCTCCACGACGCATTGCACACCGAAGAATCAGGAATTTGATGTCTTCTAAATACTGGAAGACAGCTCCAAAGTTGAAAGACTGTGAACTTTCTAGATCTGGAGTACCTCATTATCATAAGAGGAAGACTTGCTATGCTTTTGAAAAATCTCAGCACAACACTATTATTAAGAAGAGGAAAATTGTTGATCGGGTTTCCGGAGTAACTTCTGATGGAGGATTCAGCAGTGAGAGTGTGTCCAATTCACCTCAGAAAGGGACGGATGGAGACAAGCCTAGCTCATCTTCAAAACTGCATGTAGCTAAGGCTAAAGATTCTCATGTAAAGTTTAGCATTAAGTCGATAAGGATTCCAGAGCTTTATATCGAGGTTCCTGAAACTGCAACTGTTGGTTCACTAAAGAGGACAATCATGGAGGCGGTAATGGCTATACTTGGAGGGGGTGCACATGTTGGTGTTCTTCATCATGGGAAAAAAGTTAGAGATGACAATAGAACTCTAGTGCAGACTGGTATATCTTGCAATGAAAATTTGGATACCCTGACTTTCATGTTGGAGCCCAGTTCTATTCAAGCTTCTCCAACCGTTTGTGTTGGGGATCCTTCTTCTCAATGTGAAACATCCCAGCTTACCAGGCCCACAGAAACTCCTGTCTTAGATTCAGGGGTTACTGATACCTTGCTTGACTCACCCTTGCTAACTTATCCGGGCAACCTAATTGAAAGTAACCATGAATCTACTTCTTCACTCGCCGACATTACAGTTGACAAAATAACACCTGATTCCAGAGCGCTGGTTCCTGTTCCAGCTAGCACAGAAGCATTAGCTGTGGTTCCTGTGAGTCAGAAAACCAAGCGCTCTGAATTTGTACAGCGTCGAACCAGGAGACCATTTTCTGTGGCTGAGGTAGAAGCACTTGTTCACGCAGTTGAGGAACTTGGAACTGGGAGGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACGTATGTAGACTTAAAGGATAAATGGAAAACATTGGTGCACACTGCAACAATCTCCCCTCAACAAAGGAGAGGAGAGCCAGTACCTCAGGAGCTCTTGGACAGAGTTTTGGCTGCTCATGCTTTCTGGTCTCAGCACCAAGCCAAGCAGCATGGCAAGCATCAAGCTGGATCTGGAACCTTGAAGATTGCAGAAGCCTCAGCTGAAAGACCGTTGGCATTTGTAAATGATTTGATGCAATAA 2088 0.4286 MTGIDGSIYPLTGWSGCVVKTMGYKGFKATVAWFLFTVLKRVDYGFSGFRVPIIPKAPRSARRRGPFKKAAEDGRVCAIELLASLAGQLLQESESSASSNASEGNHQPTISQGVIEQDRQDEVKPLKTEEIHQGSCAESTVKTEVVSQNSSQKPLPHAKIDCTLGRVSVNNDSDCWEKVEAEVKSEIFKWDKKFGNYSNRVVETPEKFRESSDGNMKNGFKLEQEAGSSCFRGTNLADKCSLKGHLEIASFSKHGNGIKLGFRDDDENFLRCKKVCTKLKAFRSPRRIAHRRIRNLMSSKYWKTAPKLKDCELSRSGVPHYHKRKTCYAFEKSQHNTIIKKRKIVDRVSGVTSDGGFSSESVSNSPQKGTDGDKPSSSSKLHVAKAKDSHVKFSIKSIRIPELYIEVPETATVGSLKRTIMEAVMAILGGGAHVGVLHHGKKVRDDNRTLVQTGISCNENLDTLTFMLEPSSIQASPTVCVGDPSSQCETSQLTRPTETPVLDSGVTDTLLDSPLLTYPGNLIESNHESTSSLADITVDKITPDSRALVPVPASTEALAVVPVSQKTKRSEFVQRRTRRPFSVAEVEALVHAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLVHTATISPQQRRGEPVPQELLDRVLAAHAFWSQHQAKQHGKHQAGSGTLKIAEASAERPLAFVNDLMQ 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02225 695 CDD SANT_TRF 579 629 - -
Spst1g02225 695 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 574 632 IPR017930 -
Spst1g02225 695 PANTHER TELOMERIC REPEAT BINDING PROTEIN 40 670 IPR031105 -
Spst1g02225 695 MobiDBLite consensus disorder prediction 353 383 - -
Spst1g02225 695 MobiDBLite consensus disorder prediction 94 116 - -
Spst1g02225 695 ProSiteProfiles Myb-like domain profile. 573 628 IPR001005 -
Spst1g02225 695 SMART sant 577 630 IPR001005 -
Spst1g02225 695 FunFam Telomere repeat-binding protein 1 567 670 - -
Spst1g02225 695 SUPERFAMILY Ubiquitin-like 387 470 IPR029071 -
Spst1g02225 695 MobiDBLite consensus disorder prediction 353 377 - -
Spst1g02225 695 Gene3D - 566 670 - -
Spst1g02225 695 SUPERFAMILY Homeodomain-like 579 660 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02225 Spst-Chr1 30722684 30727953 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02225 - - gmx:100795471 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00416 5 3318639 3323018 Spst1g02225 1 30722684 30727953 ECH
Spst1g02225 1 30722684 30727953 Spst1g02225 1 30722684 30727953 ECH