Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00357 ATGGCATACGAGGCGCTTTTTGTCTTGGCCACTGTTGTTGTTAGAACATTAGCTTCAATCGAAGCACCTGTTCCTGTTCTTGCACCTCTTCTTGATGTTTCCCCGCTCAATCGAAGCACTTTTCCACCAGGATTCCTCTTTGGAACAGCTTCTGCGGCGTACCAGGTATACACACCACATCCACATGATGTTCTTCAGTCGTTGTATGAAGGTGCAGCAAAAGAAGGTGGCAGAGGTGCCAGTGTATGGGATATCTTCACCCATAAATATCCAGAAGGAAAGCTTAGTGGAGGCCTAGAACCATTTATCACTCTTTTTCATTGGGATCTTCCTCAGGTTTTAGAAGATGAGTATGGTGGTTTCCTAAGTCCTCACATTATAAAAGATTTTGAAGATTATGCAGAACTTTGCTTTAAAGAGTTTGGAGACAGAGTAAAGTATTGGATTACTTTAAATGAACCATGGAGTTACAGTACATTTGGGTATGCATATGGGACGGCGCCACCAAAACGATGTTCAAAATGGTTGAATCCAAAATGCATTCATGGTGACTCCGGAAAAGAACCCTATTTAGTTTCACATAACCTACTTCTTGCTCATGCAACCGCTGTCAAAGTCTACAGGACCAAGTACCAGGAATCTCAAAAAGGAGTGATAGGGATAACCCTTGTGAGCAACTGGTTCGAGCCACTTTCAGAAACCAAGTTAGATCAAAGTGCTTCTCAGCGAGCACTTGATTTCATGTTTGGATGGTTTATGGAACCATTGACATCAGGAAAATATCCAGAAAGCATGCGTTCTCTTGTTGGAAAACGATTGCCAAAGTTCTCGAAACAACAAGTCAAACTTCTGCATGGTTCATTTGATTTTGTTGGACTAAATTATTACACCTCTAACTACGTTTTCAATGCACCCAAACAAGGCACCGTCAAACCTAATTACGCTACAGATTCTAATGCCAATCTTACAACTGAACGCAACGGGATTCCAATAGGTCCAGTGGCTGCTTCAAGCTGGTTATATGTTTATCCCCGAGGAATTAGAGAATTATTGTTGTATACCAAAGAAAAGTACAACAATCCATTAATTTACATCACTGAAAATGGTGTTGACGAATTTAATGATCCTACACTATCACTTGAAGAATCTCTTGTTGATACTTTTAGAATTGATTATCATTATAGGCATTTGTTTTATCTTCACTCAGCAATCAGTGAAGATGCAGATTACAGACAGTATAATCTACCAACTATCACGGATCTTGACCGTCGAAATACCAGAACTCAGAGATTAAAAAATATCGACGGTCGATCACGAGATTCGCTTAGAACCCTAGCTCTGGCTGGGTATCCACCGCTATTAGGTGAAATTTCCATGGATGAAATTAGAAATGAAAGCCCAACCGAAGCTAAGAAAACCAAGTCAAAGACCCCTCGAAAACCGAAAGAAACTCTTCTGAAGCAGAAATCTCCGGCCGAATTCTTCGCAGAAAACAAGAACATTGCAGGATTTGATAACCCTGGAAAATCTCTTTATACTACTGTTAGAGAGCTTGTGGAGAACTCACTTGACTCGGCGGAGTCCATTTCCGAGCTTCCGGTTGTTGAAATTACCATTGAGGAAATAAGAAAAAGCAAATTTAATTCCATGATTGGTCTAGTTGACCGTGAGCGTGTTGATGCGGCGTTATATGAGGATTATGAAACCGAGAAGGCTCGAGAGAAACGATTAGCAAAAGAGGCTCGTGCTCAGGAAATGCAAGCAAAGAATGCTGCCCTCGGAAAGAAGGTGAAAGAAACTGCAGCTCATAAGGTTTTCAAAGGTCGAGGGGAGGCTTCCTTTTATAGAGTTACATGTAAGGATAATGGAAAGGGAATGCCACATGATGACATACCAAATATGTTTGGCCGAGTTCTATCTGGGACAAAATATGGCTTGAAACAGACGCGGGGCAAGTTTGGTCTTGGTGCGAAGATGGCATTAATATGGTCTAAAATGAGTACAGGGCTTCCTATTGAGATCTCTTCATCAATGAGGAACCAAAATTATATTTCATTTTGCAGGCTGGATATTGACATTCATAAGAATATACCCCACATACATTTACATGAAAAACGGGAGAATAAGGAATACTGGCGGGGAGCTGAAATTCAAGTTGTCATAGAGGGGAACTGGACAACTTACCGTTCAAAAATATTGCATTACATGAGACAAATGGCTGTCATCACCCCTTATGCACAATTTCTATTTAAATTTGTGTCAGATGCACCTGACAAGAATGTCTCTGTAAGATTTGCTCGCAGAACAGATGTAATGCCGCCAATTCCTATGGAGACAAAGCATCATCCATCTTCTGTTGATTTGCTGCTAATTAAACGACTTATTGCTGAAACATCAAAGCAAAACCTTTTGCAGTTTCTTCAGCATGAGTTTGTAAATATCAATAAATCTTATGCTGAAAGATTAATAGGAGAAATGGGTCCAGACTTCAGCGCAAAAATCCCTGTGAAGTCTCTAACCTCACAACAAATAGTACGCATTCATCAGTTGCTTCGTCAAGCCAAGTTTGACGATCCTAGTGGTCATTGTCTTAGTCCTGCTGGTGAATACAATCTTCGATTAGGAATTATAAAAGAGCTGCACCCGGACATGGTTGCAACTTATTCAGGCAGTGCTCAAGTTTTTGAAGGCCACCCATTCATTGTGGAAGCTGGAGTCAGTGTAGGTGGAAAAGATGTCAAACAAGGTCTGAATATATTTCGATTTGCCAATAGAATTCCACTACTTTTTGAGCAAGGTGCCGATGTCGTAACCAGGACTGCCCATAAAAGAATCAACTGGAGTAGTTACAAAATCAACCAGATACAAGATAAGATTGGTGTCTTTGTAAGCATTGTGAGCACAAAAATTCCATTCAAAGGAACTGGGAAAGAATACATTGGAGATGACATAACCGAGATTGCTTCTGCTGTCAAGTATGCTATTCAGCAGTGTTGTGTCCAATTAAAATCCAAGATTGTGAAAAAGATGCAGGCCCGAGAGCAGCTGGAGAGGAAACGAAATCTAAGCAGGTATATCCCCGATGCTTCTGGTGCAATATACAATGTTTTGAAAGAAATGACACAGTTACATGCAGCAAAGAAGATTCGTTATGGGGATGATGATGTAGAACTACTGAGAAATGTCTCTGAGAATTTGATTACGAAAGAAACATTGAGTGAAAAGCTTGCTAAACATGTTGAACAGGTGGACTATGAAATGGCATTGGAGTATGCGACGCAGAGTGGAGTAAGCGAGGAACCCCGAGAAACAATATATATACAATCATTGGAAGATGAAAATAAGATGATCGACCTACAGGCTCCATTTATTATTTTCAGAGTTCCTCAGATCGCCATTCTGGGAGCTGGAATCTTTGTGAAGACTCAGTACATTCCCAGACTCTCCGAGATCTCTCATCTCTTCCATCTCAAAGCCATTTGGAGCCGCACTCAGGAATCTGCTACAGCGGCCGTAGAGGTAGCTGGTAAGCATTTTTCGGGAGTCGAGTGTAAATGGGGAGACAGCGGTCTTGAAGAGATCATCCAAGATGGATCCATAGATGCAGTTGCTGTCGTTTTGGCTGGACAAAATCAGGTTGACATTTCATTGAGGGTGCTAAAGGCTGGTAAACATGTTCTTCAAGAGAAACCTGCTGCATCCTGTACAAGTGAATTAGAAACTGCATTGTCTAGCTACAAATCTATTTCTGCTGATGCTCCTGGTCAATTAATTTGGTCTGTGGCTGAAAATTACCGATTGGAGGCTGGTTTAGTCGAGTGCAAGAAACTAATTGATGGCATTGGGAAAATGATGAGTGTCCAAGTTATAATCGAAGGATCAATGAACAGTTCAAACCCCTACTTTTCAAGCAATTGGAGGCGCAATTTCACTGGAGGTTTCATTCTTGATATGGGTGTGCATTTCATTGCAGGGTTAAGAATGACCTTGTGGCGAGTTGTTGGCCTGAATGGAACCCTGCAAGTTGAACGTGGATTCCAAGGACAACATGGTTACCTGGTTTCATTTTATGGTGCCGATGGACAAAACAAAAGCTCCTTTTTCCCATTCTGTGGAGTAACTGAAGAATTAAAAGCTTTCATTAATGACGTATCTGAAAACACCCTCAAGAAGGGGAGTCAGTTTGTGGCTGAGCCCCGCCTCTCTTTTGTCGAGGGTGCAAGAGATGTTGCTGTGTTAGAGGCAATGCTTGAATCTGGAGCAAGGAAAGGTGAACTAGTTCAGGTGAAAAAGTTTTGA 4299 0.4131 MAYEALFVLATVVVRTLASIEAPVPVLAPLLDVSPLNRSTFPPGFLFGTASAAYQVYTPHPHDVLQSLYEGAAKEGGRGASVWDIFTHKYPEGKLSGGLEPFITLFHWDLPQVLEDEYGGFLSPHIIKDFEDYAELCFKEFGDRVKYWITLNEPWSYSTFGYAYGTAPPKRCSKWLNPKCIHGDSGKEPYLVSHNLLLAHATAVKVYRTKYQESQKGVIGITLVSNWFEPLSETKLDQSASQRALDFMFGWFMEPLTSGKYPESMRSLVGKRLPKFSKQQVKLLHGSFDFVGLNYYTSNYVFNAPKQGTVKPNYATDSNANLTTERNGIPIGPVAASSWLYVYPRGIRELLLYTKEKYNNPLIYITENGVDEFNDPTLSLEESLVDTFRIDYHYRHLFYLHSAISEDADYRQYNLPTITDLDRRNTRTQRLKNIDGRSRDSLRTLALAGYPPLLGEISMDEIRNESPTEAKKTKSKTPRKPKETLLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIRKSKFNSMIGLVDRERVDAALYEDYETEKAREKRLAKEARAQEMQAKNAALGKKVKETAAHKVFKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRNQNYISFCRLDIDIHKNIPHIHLHEKRENKEYWRGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDAPDKNVSVRFARRTDVMPPIPMETKHHPSSVDLLLIKRLIAETSKQNLLQFLQHEFVNINKSYAERLIGEMGPDFSAKIPVKSLTSQQIVRIHQLLRQAKFDDPSGHCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTAHKRINWSSYKINQIQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIASAVKYAIQQCCVQLKSKIVKKMQAREQLERKRNLSRYIPDASGAIYNVLKEMTQLHAAKKIRYGDDDVELLRNVSENLITKETLSEKLAKHVEQVDYEMALEYATQSGVSEEPRETIYIQSLEDENKMIDLQAPFIIFRVPQIAILGAGIFVKTQYIPRLSEISHLFHLKAIWSRTQESATAAVEVAGKHFSGVECKWGDSGLEEIIQDGSIDAVAVVLAGQNQVDISLRVLKAGKHVLQEKPAASCTSELETALSSYKSISADAPGQLIWSVAENYRLEAGLVECKKLIDGIGKMMSVQVIIEGSMNSSNPYFSSNWRRNFTGGFILDMGVHFIAGLRMTLWRVVGLNGTLQVERGFQGQHGYLVSFYGADGQNKSSFFPFCGVTEELKAFINDVSENTLKKGSQFVAEPRLSFVEGARDVAVLEAMLESGARKGELVQVKKF 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00357 1432 SUPERFAMILY (Trans)glycosidases 27 422 IPR017853 -
Spst5g00357 1432 Coils Coil 564 589 - -
Spst5g00357 1432 PANTHER GLYCOSYL HYDROLASE 96 420 IPR001360 GO:0004553|GO:0005975
Spst5g00357 1432 FunFam DNA topoisomerase 6 subunit B 577 779 - -
Spst5g00357 1432 SUPERFAMILY Ribosomal protein S5 domain 2-like 858 1019 IPR020568 -
Spst5g00357 1432 FunFam DNA topoisomerase 6 subunit B 858 1083 - -
Spst5g00357 1432 Pfam Topoisomerase VI B subunit, transducer 859 1017 IPR015320 GO:0003677|GO:0003918|GO:0006265
Spst5g00357 1432 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 616 695 - -
Spst5g00357 1432 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1272 1340 - -
Spst5g00357 1432 MobiDBLite consensus disorder prediction 458 484 - -
Spst5g00357 1432 FunFam DNA topoisomerase 6 subunit B 780 857 - -
Spst5g00357 1432 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1129 1289 IPR036291 -
Spst5g00357 1432 Gene3D Glycosidases 28 94 - -
Spst5g00357 1432 Gene3D Glycosidases 95 422 - -
Spst5g00357 1432 PRINTS Glycosyl hydrolase family 1 signature 386 397 IPR001360 GO:0004553|GO:0005975
Spst5g00357 1432 PRINTS Glycosyl hydrolase family 1 signature 287 301 IPR001360 GO:0004553|GO:0005975
Spst5g00357 1432 PRINTS Glycosyl hydrolase family 1 signature 363 371 IPR001360 GO:0004553|GO:0005975
Spst5g00357 1432 Hamap Type 2 DNA topoisomerase 6 subunit B [top6B]. 483 1062 IPR005734 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Spst5g00357 1432 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 609 751 IPR036890 -
Spst5g00357 1432 Pfam Oxidoreductase family, NAD-binding Rossmann fold 1131 1240 IPR000683 GO:0000166
Spst5g00357 1432 Coils Coil 999 1019 - -
Spst5g00357 1432 Gene3D - 479 779 IPR036890 -
Spst5g00357 1432 Gene3D - 858 1083 IPR014721 -
Spst5g00357 1432 Gene3D - 780 856 - -
Spst5g00357 1432 FunFam NAD-dependent dihydrogenase, Gfo/Idh/MocA family 1131 1286 - -
Spst5g00357 1432 Pfam Glycosyl hydrolase family 1 96 420 IPR001360 GO:0004553|GO:0005975
Spst5g00357 1432 Pfam Glycosyl hydrolase family 1 39 89 IPR001360 GO:0004553|GO:0005975
Spst5g00357 1432 CDD TopoIIB_Trans 868 1018 IPR015320 GO:0003677|GO:0003918|GO:0006265
Spst5g00357 1432 Gene3D - 1130 1317 - -
Spst5g00357 1432 MobiDBLite consensus disorder prediction 462 484 - -
Spst5g00357 1432 SUPERFAMILY S13-like H2TH domain 781 853 IPR010979 GO:0003676
Spst5g00357 1432 Gene3D Dihydrodipicolinate Reductase; domain 2 1326 1430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00357 Spst-Chr5 2952451 2969160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00357 1 408 Glycoside Hydrolase AT5G24550 40.842 2.07e-109 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00357 K03167 - gmx:100809558 1234.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00357 5 2952451 2969160 Spst5g00357 5 2952451 2969160 ECH
Spst5g00357 5 2952451 2969160 Spst2g02401 2 23677341 23680287 PCT