Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02401 ATGGCCTTCAATGGCTATTTCTTTCTTCCCCTCATTGCTCTTGTTCTTGTAAGATGTTCCAAAGTTACATGCGAAGAAGCAGATTCAGTTTCACCTATTATTGACATTTCTCTAAATCGGAACAGTTTCCCTGAAGGGTTCATCTTTGGGGCAGGATCTTCTTCCTACCAGTTCGAAGGAGCAGCAAGAGAAGGTGGTAGAGGACCAAGTGTGTGGGATACTTTCACCCATAAATATCCAGATAAGATTCAAGATAGAAGTAACGGGGACGTTGCCATTGACTCATATCACCACTACAAGAAAGATGTAGGGATGATGAAGGATATGAATTTGGATTCATATAGATTTTCCATATCTTGGTCAAGGATTTTACCAAAAGGGAAGCTGAGTGGAGGAATAAATCAAGAAGGAATCAACTATTACAACAACCTTATCAATGAGCTAGTGGCCAATGGTATAAAACCATTTGCGACTCTTTTCCATTGGGATCTTCCCCAAGCACTAGAAGATGAGTATGGTGGCTTTTTAAGTCCACTCATAGTGAAGGATTTTGGAGATTATGCAGAACTTTGCTTTAAGGAATTTGGTGATAGGGTGAAATATTGGGTTACATTGAATGAACCATGGAGTTATAGTCAAAATGGCTATGCAAATGGACAAATGGCACCTGGTCGTTGTTCTACTTGGATGAATTCAAATTGCACTGGAGGTGATTCTGCAACAGAGCCATATTTGGTTACTCATCACCAACTTCTTGCTCATGCAGCAGCTGTTGGTGTCTACAAGACCAAGTATCAGGCATCTCAGAAAGGTGTGATAGGCATAACCTTGGTAGCTAATTGGTTCTTGCCACTCAGAGACAGTAAACTTGACCAAAAGGCTACTGAAAGAGCAATTGACTTCATGTATGGATGGTTTATGGATCCATTAACATTCGGGGATTATCCAAAAATCATGCGATCCCTTGTGGGAGCAAGATTGCCAAAGTTTACTGCTCAGCAAGCCAAACTACTTGTTGGTTCATTCGATTTCATTGGTCTGAATTATTACTCTACAACATATGCCTCTGATGCACCTCAGCTAAGCAATGCCAGACCTAGCTACTTGACGGATTCTCTTGTCATTCCTGCATATGAACGTGATGGGAAACCTATTGGAATAAAGATTGCTTCAGATTGGTTGTATGTTTATCCAAGAGGAATTCGTGACCTTTTATTATATACCAAGGAAAAGTACAACAATCCTTTGATCTACATCACTGAGAATGGAATAAATGAGTATGATGATCCAACCCTATCGCTTGAAGAATCTCTGATGGATACCTTTAGAATTGATTATCATTATCGTCATCTGTTTTATCTTAAATCTGCAATTAGGAATGGCGCAAATGTAAAAGGATATTATGTGTGGTCTTTGTTCGACAATTTTGAGTGGTCTTCAGGCTATACATCACGATTTGGAATGATATTCGTGGATTACAAGAATAGTTTGGAGAGATACCAAAAAGTTTCTGCTCTATGGTTCAAGAATTTTCTCAAAAGGGAAACTAGACTTTATGGCTCTAGTAAATAA 1572 0.3912 MAFNGYFFLPLIALVLVRCSKVTCEEADSVSPIIDISLNRNSFPEGFIFGAGSSSYQFEGAAREGGRGPSVWDTFTHKYPDKIQDRSNGDVAIDSYHHYKKDVGMMKDMNLDSYRFSISWSRILPKGKLSGGINQEGINYYNNLINELVANGIKPFATLFHWDLPQALEDEYGGFLSPLIVKDFGDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGQMAPGRCSTWMNSNCTGGDSATEPYLVTHHQLLAHAAAVGVYKTKYQASQKGVIGITLVANWFLPLRDSKLDQKATERAIDFMYGWFMDPLTFGDYPKIMRSLVGARLPKFTAQQAKLLVGSFDFIGLNYYSTTYASDAPQLSNARPSYLTDSLVIPAYERDGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYDDPTLSLEESLMDTFRIDYHYRHLFYLKSAIRNGANVKGYYVWSLFDNFEWSSGYTSRFGMIFVDYKNSLERYQKVSALWFKNFLKRETRLYGSSK 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02401 523 FunFam Beta-glucosidase 12 29 514 - -
Spst2g02401 523 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 47 61 IPR033132 -
Spst2g02401 523 ProSitePatterns Glycosyl hydrolases family 1 active site. 417 425 IPR018120 -
Spst2g02401 523 Pfam Glycosyl hydrolase family 1 40 515 IPR001360 GO:0004553|GO:0005975
Spst2g02401 523 SUPERFAMILY (Trans)glycosidases 38 513 IPR017853 -
Spst2g02401 523 PANTHER GLYCOSYL HYDROLASE 42 516 IPR001360 GO:0004553|GO:0005975
Spst2g02401 523 Gene3D Glycosidases 31 514 - -
Spst2g02401 523 PRINTS Glycosyl hydrolase family 1 signature 440 451 IPR001360 GO:0004553|GO:0005975
Spst2g02401 523 PRINTS Glycosyl hydrolase family 1 signature 461 478 IPR001360 GO:0004553|GO:0005975
Spst2g02401 523 PRINTS Glycosyl hydrolase family 1 signature 417 425 IPR001360 GO:0004553|GO:0005975
Spst2g02401 523 PRINTS Glycosyl hydrolase family 1 signature 485 497 IPR001360 GO:0004553|GO:0005975
Spst2g02401 523 PRINTS Glycosyl hydrolase family 1 signature 341 355 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02401 Spst-Chr2 23677341 23680287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02401 8 517 Glycoside Hydrolase AT5G44640 53.816 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02401 K01188 - gmx:100784723 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02401 2 23677341 23680287 Spst2g02401 2 23677341 23680287 ECH
Spst5g00357 5 2952451 2969160 Spst2g02401 2 23677341 23680287 PCT