Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00356 ATGTTTCTTCACTCAATCGAAGTACTTTTCCGACAGGCTTTGTCTTTGGAACAGCAACCGCATCGTACCAGTTCAATTAAACATCAACATCAGATCAAAGATCCTACATACGAGGGTGCGGCAAAAGAAGGTGGAAGAGGACCAAGTATATGGGATGAGTTCACCCACCATTATCCAGAGAAAATACGTGATAGAAGCAATGGAGATGTAGCAGTTGACCAATATCATCGCTACAAGGAAGATATTAAGATAATGAGGAATATGAATCTGGATGCATACAGATTCTCCATCTCTTGGTCAAGAATTCTCCCAAAAGGAAAGCTCAGTGGAGGTATAAACCAAGAAGGAATCAGATATTACAACAACCTCATCGATCATTTGCTAGCCAACGGTCTACAACCATATGTGACACTTTTCCACTGGGATCTTCCCCAAGCTTTGGAAGAAGAGTATGGTGGTTTCTTAAGTCCTCGTATTGTAAAAGATTTTGAAGAGTACGCGAATCTATGTTTCAAAGAATTTGGAGATAGGGTGAAACATTGGATTACTTTAAATGAGCCATGGTCTTACAGTAGAGGTGGTTATGCAATTGGGATCTATGCACCAGGTCGATGTTCTGAATGGTTAAACCTAAACTGCACTGGTGGTGATTCAGGAACAGAACCCTATTTAGCTTCACATTATCAACTACTTGCTCATGCAGCATCTGTTCAAGTCTACAAGAAAAAATATCAGAAATCTCAAAAAGGAATCATAGGCATAACACTAGTGTGTTTCTGGTATACGCCATATTCAAATCACAAATTGGATAAAGATGCTGCTAATCGAGCACTTGACTTCATGTATGGATGGTTCATGGAACCATTGACATCAGGAAAATATCCGGAGAGCATGATTTCCCTGGTTGGTGAACGACTGCCAAAGTTCTCTGAAGAAGAAGCAAGACTTGTGACTGGTTCATATGATTTTATTGGACTAAACTATTACACCACTGCCTATGCTGCCAATGCACCCAAAACCAGACCTAATTATGATTCTGATTCCAATGTCAAAACTTCATATTCACTCAATGGAATTCCAATAGGTCCATCGGACAATGAAAAAGACAAGAGAAACAGAATCATGTTTGAAAATTATACACAAATGGTTTTCAAACCCGGCCATGCCTGCAGTCGAAGTTAG 1182 0.3976 MFLHSIEVLFRQALSLEQQPHRTSSIKHQHQIKDPTYEGAAKEGGRGPSIWDEFTHHYPEKIRDRSNGDVAVDQYHRYKEDIKIMRNMNLDAYRFSISWSRILPKGKLSGGINQEGIRYYNNLIDHLLANGLQPYVTLFHWDLPQALEEEYGGFLSPRIVKDFEEYANLCFKEFGDRVKHWITLNEPWSYSRGGYAIGIYAPGRCSEWLNLNCTGGDSGTEPYLASHYQLLAHAASVQVYKKKYQKSQKGIIGITLVCFWYTPYSNHKLDKDAANRALDFMYGWFMEPLTSGKYPESMISLVGERLPKFSEEEARLVTGSYDFIGLNYYTTAYAANAPKTRPNYDSDSNVKTSYSLNGIPIGPSDNEKDKRNRIMFENYTQMVFKPGHACSRS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00356 393 Pfam Glycosyl hydrolase family 1 38 354 IPR001360 GO:0004553|GO:0005975
Spst5g00356 393 FunFam Beta-glucosidase 7 34 382 - -
Spst5g00356 393 Gene3D Glycosidases 33 383 - -
Spst5g00356 393 PANTHER GLYCOSYL HYDROLASE 36 348 IPR001360 GO:0004553|GO:0005975
Spst5g00356 393 SUPERFAMILY (Trans)glycosidases 36 364 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00356 Spst-Chr5 2947929 2952352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00356 38 363 Glycoside Hydrolase AT5G42260 54.711 2.64e-134 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00356 K01188 - qsa:O6P43_028119 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00356 5 2947929 2952352 Spst5g00356 5 2947929 2952352 ECH
Spst5g00356 5 2947929 2952352 Spst2g02402 2 23683157 23686817 PCT