Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02402 ATGGCACTCATGAACTTTTGCATTTTCAGCCTCCTTCTGTTTGTTCTTGTGACTAGCAAATCAAATGTTGATTGCACAGAAACTGGTGCAGTTGATCCCATGCTTGATGCTGCTTCTCTGAATCGGGACAGTTTCCCTCCAGGTTTCATCTTTGGGGCTGGATCTTCATCCTACCAGTTTGAAGGTGCAGCAAGTGAAGGTGGTAGAGGACCAAGTGTATGGGATACTTTCACCCATGAATATCCAGAAAAGATACTTGACAGAAGCAATGGAGATGTGGCTATTGATGCATATCACCGTTATAAGGAAGATGCTAAATTTATGAAGGATATGAACTTGGATTCATACAGATTCTCGATTTCTTGGTCCAGAATCCTACCAAAAGGAAAGCTAAGTGGAGGCATAAATCAAGAAGGAATCGACTATTACAACAATCTCATCAACGAACTATTGGCTAATGGTATAGAACCATTCGTAACTCTTTTCCATTGGGATCTTCCCCAATATTTAGAAGATGAATATGGTGGCTTCCTAAGTCCTCTCATAATCAAGGATTTTCGAGATTATGCGGACCTTTGCTTCAAGGAATTTGGAGGTAGAGTTAAGTATTGGGTTACATTGAATGAGCCATGGAGTTACAGCAACAATGGCTATGCAAATGGAAGCATGGCACCAGGACGTTGTTCTTCTTGGTTTAATCCAAATTGCACTGGAGGGGATTCTGGTACAGAGCCCTATTTAGTTTCACACTACCAACTACTTGCTCATGCAGCAGCTGTTCGTGTTTACAGGACCAAGTATCAGGTATCACAAAAAGGTTTGATTGGCATCACCTTAGTAGCTAACTGGTTTGTTCCATTCTCGGATACTAAATCTGACCATAAGGCTGCTGAAAGATCGATTGAGTTCATGTATGGATGGTTTATGGATCCATTAACATCAGGAGACTATCCAAAAAGTATGCGATCTCTAGTGAAAAGTCGACTACCAAAATTTACTGCAGAACAATCCAGACAACTCATTGGTTCATTTGATTTTATTGGCTTAAACTACTATACTTCAACATATGCCTCTGACGCACCTCATTTGAGCAATGCTAAACCTAGCTATGCAACTGATTCTTTAGTCATTCCTCAATTTGAACGCAATGGAAAGCCCATAGGTATAAAGATTGCTTCTGATTGGTTGTATGTTTGTCCAAGAGGAATTCGTGATCTTCTATTATATATCAAGAAAAAGTATAATAATCCTTTGATTTACATCACTGAAAATGGTGTAAACGAATTCAACGACCAAACACTATCATTAGAGGAATCTCTTTTAGATACTTACAGAATTGATTACTATTATCGTCATCTTTTCTATCTTCGTTCTGCAATTAGGTATGGTGCAAACGTAAAGGGATATTTTGCATGGTCTTTATTCGACAATTTTGAATGGTCCTCTGGTTATACTGTGCGATTTGGAATGACCTTGGTGGATTACAAAAATGGTTTGAAAAGATACGAGAAACTCTCTGCAATATGGTTCAGGAATTTTCTCAAGAAAAAAAATACACTTTTTAATTCTAGTTAA 1575 0.3835 MALMNFCIFSLLLFVLVTSKSNVDCTETGAVDPMLDAASLNRDSFPPGFIFGAGSSSYQFEGAASEGGRGPSVWDTFTHEYPEKILDRSNGDVAIDAYHRYKEDAKFMKDMNLDSYRFSISWSRILPKGKLSGGINQEGIDYYNNLINELLANGIEPFVTLFHWDLPQYLEDEYGGFLSPLIIKDFRDYADLCFKEFGGRVKYWVTLNEPWSYSNNGYANGSMAPGRCSSWFNPNCTGGDSGTEPYLVSHYQLLAHAAAVRVYRTKYQVSQKGLIGITLVANWFVPFSDTKSDHKAAERSIEFMYGWFMDPLTSGDYPKSMRSLVKSRLPKFTAEQSRQLIGSFDFIGLNYYTSTYASDAPHLSNAKPSYATDSLVIPQFERNGKPIGIKIASDWLYVCPRGIRDLLLYIKKKYNNPLIYITENGVNEFNDQTLSLEESLLDTYRIDYYYRHLFYLRSAIRYGANVKGYFAWSLFDNFEWSSGYTVRFGMTLVDYKNGLKRYEKLSAIWFRNFLKKKNTLFNSS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02402 524 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Spst2g02402 524 ProSitePatterns Glycosyl hydrolases family 1 active site. 419 427 IPR018120 -
Spst2g02402 524 FunFam Beta-glucosidase 12 31 516 - -
Spst2g02402 524 Pfam Glycosyl hydrolase family 1 42 518 IPR001360 GO:0004553|GO:0005975
Spst2g02402 524 SUPERFAMILY (Trans)glycosidases 34 515 IPR017853 -
Spst2g02402 524 PRINTS Glycosyl hydrolase family 1 signature 419 427 IPR001360 GO:0004553|GO:0005975
Spst2g02402 524 PRINTS Glycosyl hydrolase family 1 signature 442 453 IPR001360 GO:0004553|GO:0005975
Spst2g02402 524 PRINTS Glycosyl hydrolase family 1 signature 343 357 IPR001360 GO:0004553|GO:0005975
Spst2g02402 524 PRINTS Glycosyl hydrolase family 1 signature 487 499 IPR001360 GO:0004553|GO:0005975
Spst2g02402 524 PRINTS Glycosyl hydrolase family 1 signature 463 480 IPR001360 GO:0004553|GO:0005975
Spst2g02402 524 Gene3D Glycosidases 31 516 - -
Spst2g02402 524 PANTHER GLYCOSYL HYDROLASE 44 518 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02402 Spst-Chr2 23683157 23686817 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02402 9 517 Glycoside Hydrolase AT5G44640 55.098 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02402 K01188 - gmx:106794108 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02402 2 23683157 23686817 Spst2g02402 2 23683157 23686817 ECH
Spst5g00356 5 2947929 2952352 Spst2g02402 2 23683157 23686817 PCT