LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst5g00349	ATGTTGGTAGTTTCTTGGTTTGGTTTGGGCAGAATACATGTCTCTCTTTGTGCCAAAAGAAGTCATTCTTTTTTCTCAAAACCCCATCCAGGGTCCCAACTTGGAGCCTCTGTGACAAACAAAAGAAGCAGTAAAAGCTTGCAGCTTCAACACTTTCCTGAAATTGAAACGGAAAACCATAAAAAAGAGATCTCAGGAATTGCACTTGCACACACAAGACCAAATGAATTGGTTCAAAATGGTGAAGCCCCTGCCAATTGGAAAAAGGTTCTTCAAGGGATTCGTCAGATGAGGAGTTCTGCAGATGAACATGAACCTGTTTCACGTGAGGAAGCTGCTAATGATACTGCACCTCCTAAGGAAAGAAGATTTGCTGTCCTGGCATCTTCCCTTTTATCAAGCCAAACTAAGGAACATGTTACCCGAGGAGCGACCCAACGTCTTCATGAAAATGGTCTGCTTACGGCTGAAGCAATGAACAAAGCTGATGAAGAAACCATCAAAAAGTTTATTTACCCAGTAGGATTTTATACAAGAAAAGCCAGTAACTTGAAGAAAATTGCAAATATTTGTCTCATGAAGTATGATGGAGACATACCCAGCTCAATTGAGGAACTACTCTTGCTGCCAGGAGTAGGTCCGAAAATAGCTCATCTGGTTATGATTCTTGGATGGAACGATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGTCTTGGGTGGGTTTCGAGATCAGGCTCAAAACAGAAAACTAGGACACCGGAAGAAACCAGAAAAGGGCTGCAACGGTGGCTTCCGAAGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACGAACGATTTGTACTTCTCTACGGCCTCACTGTGGAGAGTGTAGTGTATGTAGCTTCTGTCCATCAGCATACAAGGAGGCTTCAAGCTTTTCATCCAAGTCCAAAAAGCTTGCATTGAACAAGAAACCTTAA	990	0.4263	MLVVSWFGLGRIHVSLCAKRSHSFFSKPHPGSQLGASVTNKRSSKSLQLQHFPEIETENHKKEISGIALAHTRPNELVQNGEAPANWKKVLQGIRQMRSSADEHEPVSREEAANDTAPPKERRFAVLASSLLSSQTKEHVTRGATQRLHENGLLTAEAMNKADEETIKKFIYPVGFYTRKASNLKKIANICLMKYDGDIPSSIEELLLLPGVGPKIAHLVMILGWNDVQGICVDTHVHRICNRLGWVSRSGSKQKTRTPEETRKGLQRWLPKEEWVPINPLLVGFGRTICTSLRPHCGECSVCSFCPSAYKEASSFSSKSKKLALNKKP	329

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst5g00349	329	FunFam	Endonuclease III homolog	222	312	-	-
	Spst5g00349	329	Gene3D	Hypothetical protein; domain 2	109	223	-	-
	Spst5g00349	329	CDD	ENDO3c	124	286	IPR003265	GO:0006284
	Spst5g00349	329	PANTHER	ENDONUCLEASE III-LIKE PROTEIN 1	40	322	-	-
	Spst5g00349	329	Hamap	Endonuclease III-like protein 1 [NTHL1].	83	312	IPR030841	GO:0003906\|GO:0005634\|GO:0006281\|GO:0006285\|GO:0019104
	Spst5g00349	329	Pfam	HhH-GPD superfamily base excision DNA repair protein	129	261	IPR003265	GO:0006284
	Spst5g00349	329	Pfam	Helix-hairpin-helix motif	194	221	IPR000445	GO:0003677
	Spst5g00349	329	SUPERFAMILY	DNA-glycosylase	118	312	IPR011257	GO:0003824\|GO:0006281
	Spst5g00349	329	SMART	endo3end	132	288	IPR003265	GO:0006284
	Spst5g00349	329	ProSitePatterns	Endonuclease III family signature.	197	226	IPR004036	-
	Spst5g00349	329	FunFam	Endonuclease III-like protein 1	119	223	-	-
	Spst5g00349	329	MobiDBLite	consensus disorder prediction	98	118	-	-
	Spst5g00349	329	Gene3D	-	224	312	IPR023170	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst5g00349	Spst-Chr5	2909686	2913390	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst5g00349	K10773		-	gmx:100805799	423.705

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst5g00349	5	2909686	2913390	Spst5g00349	5	2909686	2913390	ECH
	Spst5g00349	5	2909686	2913390	Spst2g02411	2	23763819	23773463	PCT