Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02411 ATGTCTCTGATACAACTCTCAAATCGAAGCGTGGTCGTTTCAGTTTCTCCTCCTTTGGGCGTTATCATGTCTGAGAAAACTCGAAGCTTTTGCAAAGCCACTCCCTCCAATACCAACACACACACTTCCATGGTTGAAGCTTCCCACTCCAAAGTTCGCGTCTTTGTCAGGAGAAATAAAAAACCCAGAAAAATGTCTGTCAAACTTGAAGAAGGGGACCATCTTCCGTCGGCCCAGGATCACAAGGTTTCGGTTACACAGAAGTTTGGCCTTCCAGAAATTGAAGAATTTGCGTACTGTGGAGCAAATGAATTGACTCGGCGTGGGAAATCTGAAATGGAATCGGATGTGGCTTCAGTGGCAAGTGAAGTTCCTTCAACTAGACCTGGGGGTGAATCACCTGCCCACTGGGTAAAGGTGCTTGAGGGGATTCGCAAAATGAGGTGTTCTGCAGATGCACCAGTGGATACCATGGGATGTGAGAAAGCCGGTGATACATTACCTCCTAAGGAGAGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCTAGCCAAACAAAGGATCCTGTTACTCATGTTCTAGTTACAAGTGTGTTTCTAAGTATAGGAGCAATTCAACGCCTTCTTGAAAATGATCTGCTTACTGCCGAAGCAATCGATAATGTTGATGAAGACACTGTCAAGAAGTTGATATACCCTGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAGTACAACGGAGACATACCAAGCTCAATTGACCAACTACTGTTACTTCCAGGCATTGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAACCGGCTTGGGTGGGTCTCAAGATTGGGCACAAAACAGAAAACTTCAACACCTGAGGAGACAAGAGAGTCCCTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAACCCTCTATTGGTAGGATTTGGACAAACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGCAGCGTAAGTAGCTTGTGTCCCTCTGCCTTCAAGGAGACCTCAAACTCAAGCCCATCTTCCAAGTCCAAAAAGCCCGGGCTGAACAAGAAGCCTTCACAATGA 1182 0.4459 MSLIQLSNRSVVVSVSPPLGVIMSEKTRSFCKATPSNTNTHTSMVEASHSKVRVFVRRNKKPRKMSVKLEEGDHLPSAQDHKVSVTQKFGLPEIEEFAYCGANELTRRGKSEMESDVASVASEVPSTRPGGESPAHWVKVLEGIRKMRCSADAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDPVTHVLVTSVFLSIGAIQRLLENDLLTAEAIDNVDEDTVKKLIYPVGFYTRKATNLKKIANICLMKYNGDIPSSIDQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTSTPEETRESLQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECSVSSLCPSAFKETSNSSPSSKSKKPGLNKKPSQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02411 393 FunFam Endonuclease III homolog 282 372 - -
Spst2g02411 393 SUPERFAMILY DNA-glycosylase 145 379 IPR011257 GO:0003824|GO:0006281
Spst2g02411 393 Gene3D Hypothetical protein; domain 2 160 281 - -
Spst2g02411 393 Pfam Helix-hairpin-helix motif 254 282 IPR000445 GO:0003677
Spst2g02411 393 SMART ccc3 349 369 IPR003651 GO:0051539
Spst2g02411 393 Hamap Endonuclease III-like protein 1 [NTHL1]. 133 372 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Spst2g02411 393 Pfam HhH-GPD superfamily base excision DNA repair protein 178 329 IPR003265 GO:0006284
Spst2g02411 393 CDD ENDO3c 174 346 IPR003265 GO:0006284
Spst2g02411 393 ProSitePatterns Endonuclease III family signature. 257 286 IPR004036 -
Spst2g02411 393 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 68 383 - -
Spst2g02411 393 MobiDBLite consensus disorder prediction 368 393 - -
Spst2g02411 393 FunFam Endonuclease III-like protein 1 169 283 - -
Spst2g02411 393 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 350 366 IPR004035 -
Spst2g02411 393 Gene3D - 282 372 IPR023170 -
Spst2g02411 393 SMART endo3end 196 348 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02411 Spst-Chr2 23763819 23773463 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02411 K10773 - gmx:100818398 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00349 5 2909686 2913390 Spst2g02411 2 23763819 23773463 PCT