Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00344 ATGCCAAGTATTTTGCTGAGGTTTTTTCTTCTTTACAACCTCCTACACCAATTTCTCCTGTGTCTGGTCCCTAAGAAGGTGCGAGCCTTCCTCCCCCTTTCCCCTTCTTGGTTCCAATTCACCGCCACCACCACACCACCACCACTAAATTCTTCTTCTTCAAAGGCCATCACAAGAATATCACTTTCAATGGACCCAAACGAGCTGAAGCGCGTGTTTCAGATGTTCGACCGCAATGGAGACGGTCGAATCACGAAGAAAGAGCTGAGCGACTCGTTGGAGAATCTGGGCATTTTGATCCCCGACAAGGATCTCAGCCTCATGATCGAGAGAATAGACGTAAACGGAGATGGGTGTGTGGACATCGACGAGTTCGGGGAGCTCTACCAGAACATCATGGACGAGCGTGATCAGGAAGACGACATGCGAGAGGCCTTCAACGTCTTCGACCAGAACGGTGATGGCTTCATCACGGTGGAAGAGTTGAGGACCGTCTTAAACTCGCTAGGGTTGAAGCAGGGAAGAACGGTCGAGGATTGCAAGAAGATGATCATGAAGGTTGACGTTGATGGAGATGGGATGGTCGATTACAAAGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTCAGTGCTCTCACTTGA 642 0.4953 MPSILLRFFLLYNLLHQFLLCLVPKKVRAFLPLSPSWFQFTATTTPPPLNSSSSKAITRISLSMDPNELKRVFQMFDRNGDGRITKKELSDSLENLGILIPDKDLSLMIERIDVNGDGCVDIDEFGELYQNIMDERDQEDDMREAFNVFDQNGDGFITVEELRTVLNSLGLKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00344 213 ProSitePatterns EF-hand calcium-binding domain. 188 200 IPR018247 -
Spst5g00344 213 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 140 205 - -
Spst5g00344 213 ProSitePatterns EF-hand calcium-binding domain. 113 125 IPR018247 -
Spst5g00344 213 CDD EFh 141 205 IPR002048 GO:0005509
Spst5g00344 213 ProSitePatterns EF-hand calcium-binding domain. 150 162 IPR018247 -
Spst5g00344 213 Gene3D - 50 131 - -
Spst5g00344 213 ProSiteProfiles EF-hand calcium-binding domain profile. 100 135 IPR002048 GO:0005509
Spst5g00344 213 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Spst5g00344 213 Pfam EF-hand domain pair 68 130 IPR002048 GO:0005509
Spst5g00344 213 Pfam EF-hand domain pair 140 205 IPR002048 GO:0005509
Spst5g00344 213 SMART efh_1 68 96 IPR002048 GO:0005509
Spst5g00344 213 SMART efh_1 141 169 IPR002048 GO:0005509
Spst5g00344 213 SMART efh_1 104 132 IPR002048 GO:0005509
Spst5g00344 213 SMART efh_1 179 207 IPR002048 GO:0005509
Spst5g00344 213 ProSiteProfiles EF-hand calcium-binding domain profile. 137 172 IPR002048 GO:0005509
Spst5g00344 213 FunFam Calmodulin-like protein 3 64 133 - -
Spst5g00344 213 SUPERFAMILY EF-hand 67 207 IPR011992 -
Spst5g00344 213 ProSitePatterns EF-hand calcium-binding domain. 77 89 IPR018247 -
Spst5g00344 213 Gene3D - 132 207 - -
Spst5g00344 213 ProSiteProfiles EF-hand calcium-binding domain profile. 175 210 IPR002048 GO:0005509
Spst5g00344 213 FunFam calmodulin-like protein 3 135 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00344 Spst-Chr5 2872913 2873554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00344 5 211 EF-hand Containing Proteins AT2G43290 63.256 5.84e-90 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00344 K13448 - gmx:100527487 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00344 5 2872913 2873554 Spst5g00344 5 2872913 2873554 ECH
Spst5g00344 5 2872913 2873554 Spst2g02421 2 23921677 23922129 PCT