Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02421 ATGGAGGCGGTGGAGTTGAAGCGCGTGTTCGAGATGTTCGATAGGAACGGGGACGGGAGAATATCGGTGGAGGAGCTGAGCCATTCGTTGGAGAATTTGGGGATAAAGATTTCGGAGAAGGAGCTGACGGAGATGATCCAGAGGATAGACGTCAATGGCGATGGCTGCGTGGACATCACGGAGTTCGGGGAGCTCTACGAGTTGATAATGGAGGAGCGGAACGAGGAGGAGGACATGCGGGAGGCCTTCAACGTCTTTGACCAGAACCGTGACGGCTTCATCACCGTCGAGGAGCTCCGCACGGTACTCGGCTCCCTTGGCCTCCACCAAGGGGGCAGCATGGAGGAGTGCAGGAAGATGATCGTGAAAGTGGACGTTGACGGAGATGGCATGGTCAATTACAAGGAGTTCCAGCAAATGATGAAGGGTGGGGGATTCACTGCTCTTGGTTAA 453 0.5519 MEAVELKRVFEMFDRNGDGRISVEELSHSLENLGIKISEKELTEMIQRIDVNGDGCVDITEFGELYELIMEERNEEEDMREAFNVFDQNRDGFITVEELRTVLGSLGLHQGGSMEECRKMIVKVDVDGDGMVNYKEFQQMMKGGGFTALG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02421 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Spst2g02421 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Spst2g02421 150 SMART efh_1 41 69 IPR002048 GO:0005509
Spst2g02421 150 SMART efh_1 116 144 IPR002048 GO:0005509
Spst2g02421 150 SMART efh_1 5 33 IPR002048 GO:0005509
Spst2g02421 150 SMART efh_1 78 106 IPR002048 GO:0005509
Spst2g02421 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Spst2g02421 150 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Spst2g02421 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Spst2g02421 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Spst2g02421 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 142 - -
Spst2g02421 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Spst2g02421 150 FunFam Calmodulin 1 3 143 - -
Spst2g02421 150 Gene3D - 2 68 - -
Spst2g02421 150 CDD EFh 78 142 IPR002048 GO:0005509
Spst2g02421 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Spst2g02421 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Spst2g02421 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Spst2g02421 150 SUPERFAMILY EF-hand 4 141 IPR011992 -
Spst2g02421 150 PRINTS Parvalbumin signature 65 83 - -
Spst2g02421 150 PRINTS Parvalbumin signature 87 103 - -
Spst2g02421 150 PRINTS Parvalbumin signature 124 137 - -
Spst2g02421 150 Gene3D - 69 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02421 Spst-Chr2 23921677 23922129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02421 1 149 EF-hand Containing Proteins AT1G05990 70.000 1.64e-69 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02421 K13448 - gmx:100796922 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00344 5 2872913 2873554 Spst2g02421 2 23921677 23922129 PCT