Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00342 ATGGCTTTCAACAATGGCGTCCCCGCCACCGGCACTGGCCTCATCGCCAGTTTTGGGGAGATGCTCATCGACTTCGTCCCCACAGTTTCCGGCGTATCGTTGGCAGAGGCTCCGGGGTTCCTAAAGGCCCCCGGCGGCGCCCCAGCCAACGTCGCCATCGCCGTCGCGAGACTCGGTGGCAAGGCCGCCTTCGTAGGCAAACTCGGGGATGACGAGTTTGGCCACATGCTCGCCGGAATCCTGAAGGAGAACGGGGTCCGCTCCGACGGAATCACCTTCGACCAGGGAGCCCGCACAGCCCTGGCGTTCGTGACCCTACGCGCCGACGGAGAGCGTGAGTTCATGTTCTACCGGAACCCCAGCGCCGACATGCTCCTCCAACCAGAAGAGCTCAACCTCGAACTCATCAGATCTGCAAAAGTTTTCCATTACGGATCAATTAGTTTGATCGTGGAGCCATGCAGATCAGCACATTTGAAGGCAATGGAAGTTGCCAAAGAAGCTGGTTGCCTGCTCTCCTATGACCCCAACCTCCGCCTCCCCTTGTGGCCCTCTGCTGACGAAGCTCGTAAGCAAATACTCAGCATATGGGAGAAGGCTGATTTGATCAAGGTCAGTGATGTGGAGCTTGAGTTCCTCACAGGAAGTGACAAGATTGATGATGCTTCTGCTTTGTCATTGTGGCACCCCAATTTGAAGTTGCTCCTTGTCACTCTAGGGGAAAATGGTTCCAGATACTACACCAAGAGTTTCAAAGGATCAGTAGATGCTTTTCATGTCAACACAGTTGATACAACTGGTGCCGGTGATTCCTTTGTTGGTGCTCTGTTGTCCAAGATTGTGGATGATCAGTCCATCCTTGAGGATGAACCAAGATTAAGAGACGTACTCAAGTTTGCTAATGCATGTGGAGCAATTACAACTACCAAAAAGGGAGCAATTCCCGCCCTTCCAGAAGAGGAGGATGCATTGAAACTGATCAAAGGGGCATAG 993 0.5317 MAFNNGVPATGTGLIASFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVRSDGITFDQGARTALAFVTLRADGEREFMFYRNPSADMLLQPEELNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGCLLSYDPNLRLPLWPSADEARKQILSIWEKADLIKVSDVELEFLTGSDKIDDASALSLWHPNLKLLLVTLGENGSRYYTKSFKGSVDAFHVNTVDTTGAGDSFVGALLSKIVDDQSILEDEPRLRDVLKFANACGAITTTKKGAIPALPEEEDALKLIKGA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00342 330 Pfam pfkB family carbohydrate kinase 14 319 IPR011611 -
Spst5g00342 330 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 264 277 IPR002173 GO:0016301
Spst5g00342 330 PANTHER HEXOKINASE FAMILY MEMBER 14 324 - -
Spst5g00342 330 SUPERFAMILY Ribokinase-like 15 326 IPR029056 -
Spst5g00342 330 Gene3D - 13 330 IPR029056 -
Spst5g00342 330 FunFam Probable fructokinase-2 12 330 - -
Spst5g00342 330 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016301
Spst5g00342 330 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
Spst5g00342 330 PRINTS Ribokinase signature 195 210 IPR002139 GO:0016301
Spst5g00342 330 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Spst5g00342 330 CDD bac_FRK 14 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00342 Spst-Chr5 2850954 2853776 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00342 K00847 - gmx:100803713 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00342 5 2850954 2853776 Spst5g00342 5 2850954 2853776 ECH
Spst5g00342 5 2850954 2853776 Spst2g02423 2 23931279 23933009 PCT