Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00315 ATGAAGAACGACCACAACGACAAGAAGACCGAACACAGCAAAGACACTACCGTGGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAAGGTCGTAACATTCCTGGTAAAATATTATTGAGCCAGAGGGTTAGTTCTCCGGATTACACAAGCTTATCTTCACCTACTTATATAAGGAGCTCCTCATACAGTGATACTGGCACAAGTGACCACACATCAGACAGATTAGAGGAGGAAGTTCACATTCACAGTAAAAGTAAATCATTTGGTACTCCCGATGAGAATAGGTTAAAAGTATCATCATCCAATGTAGAGAGCTCATCTGAAGAAGTCCGGAAAACTTCATTTGGTGCTAGAGCTACAGATTCTGCTAGGGTTATGAAGTTCACTAAGGTGCTCTCTGGGACAATGGTTGTATTAGAGAAATTGCGTGAATTATCTTGGAGTGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCAACTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGAAAGCGCTTGGAGTATCTTGACTCTGTTTCTCAGTATTATGATATTCCTGATACAGAGCGCTCAGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACAGTACCTGAAGTTTCATTCTTTCAGCAAGAGCAAGTTCAAAAATCATTGGAGCGTATTCTTTACACATGGGCCATCCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTGTCAGAATACTTAGAAGGGGCCATAGATAATTGGTCAATGTCTGATTTATCTTCAGATGAAATCTCTAATGTAGAGGCCGACTGCTATTGGTGTTTGTCAAAGTTGCTTGACGGTATGCAAGACCACTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGAAGAATTGACGATCCTGTTTCAAGCCATATGGAGGAGCAGGGATTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTTATTCGTGAGATACCCTTCCATTTGGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTTCTTGTGTATATATTTGCCAGTTTTCTTCTAACGTGGTCAGAAAACCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACCAAGAACTGGACGCACCAGGAGCTCGAAATGGTACTTTCTCGTGCATTTATGTGGCACAGCATGTTCAACAACAGTCCGAGCCATTTAGCTAACTGA 1365 0.4183 MKNDHNDKKTEHSKDTTVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVSSPDYTSLSSPTYIRSSSYSDTGTSDHTSDRLEEEVHIHSKSKSFGTPDENRLKVSSSNVESSSEEVRKTSFGARATDSARVMKFTKVLSGTMVVLEKLRELSWSGVPDYMRPTVWRLLLGYAPTNSDRREGVLRRKRLEYLDSVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVSFFQQEQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGAIDNWSMSDLSSDEISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSENLQKLDFQELVMFLQHLPTKNWTHQELEMVLSRAFMWHSMFNNSPSHLAN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00315 454 FunFam TBC domain containing protein 187 318 - -
Spst5g00315 454 FunFam TBC domain containing protein 319 454 - -
Spst5g00315 454 FunFam TBC1 domain family member 131 183 - -
Spst5g00315 454 ProSiteProfiles TBC/rab GAP domain profile. 157 384 IPR000195 -
Spst5g00315 454 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 110 427 - -
Spst5g00315 454 Pfam Rab-GTPase-TBC domain 161 404 IPR000195 -
Spst5g00315 454 Gene3D - 319 454 - -
Spst5g00315 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 134 344 IPR035969 -
Spst5g00315 454 MobiDBLite consensus disorder prediction 52 76 - -
Spst5g00315 454 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 191 318 - -
Spst5g00315 454 Gene3D - 134 185 - -
Spst5g00315 454 MobiDBLite consensus disorder prediction 52 113 - -
Spst5g00315 454 SMART tbc_4 154 410 IPR000195 -
Spst5g00315 454 MobiDBLite consensus disorder prediction 77 99 - -
Spst5g00315 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 320 442 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00315 Spst-Chr5 2660651 2666731 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00315 K20360 - gmx:100785695 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00315 5 2660651 2666731 Spst5g00315 5 2660651 2666731 ECH
Spst5g00315 5 2660651 2666731 Spst2g02447 2 24113386 24118888 PCT