Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02447 ATGAGCAAGCGCCAAGAAGATGAGACTAACATAGCTACTAACCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGGTTACTCAAAGGTCGCAGTATACCCGGTAAAATATTATTGAGCCGTCGGTCAGACCCTCCGGATAACTCAAAGATATCAAATAACCCAAAATCAAAGACATCCTCACCAATTTACAAACGGAGCTTTTCCTACAATGATGCTGGTCCAAGTAATCACACATCTGGGGCAGTTGAGGAGGAATTTCACAGTACAAGCAAACCGATTAGTATTGCCAATGCCAGGAAGCTAAAAGTGTCAACTTCCTTTGGAGGTAGCCTGTCTGAAGAAATCCGCAAGTCTACCATGGGTGCTAGAGCTACGGATTCTGCAAGGGTTATGAAGTTCACTAAGGTGCTTTCTGAGACAGTGGTTATATTAGACAAGTTGCGTGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCAAAAGTGTGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGAACGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTATATCTCAGTATTATGATATTCCAGATAGTGAACGTTCAGATGATGAGGTCAACATGCTTCGTCAGATTGGTGTTGATTGTCCAAGAACTGTACCTGATGTTCCATTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGTATTCTGTATGCATGGGCCATTCGGCATCCAGCAAGTGGATATGTTCAGGGGATAAATGACCTTGTTACACCATTTTTGGTTGTTTTCTTGTCAGAATATTTTGAAGGGGATATAGATAATTGGTCAATGTTTGATTTATCTCCAGATACAATCTCTAATATAGAGGCAGACTGCTACTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGATCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCGCGGCAAATGGAGGATCAGGGACTTGAAGTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTTATCCGTGAGATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGTAGAAGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAACGTGGTCAGACAAGCTCCAGAAATTTGATTTTCAAGAATTGGTAATGTTCCTTCAGCGCCTCCCAACAGAGAATTGGACTCACCAGGAGCTTGAGATGGTGCTTTCCCGGGCATTTATGTGGCACACCATGTTCAACAACTCTCCTAGCCATTTAGCTAGCTGA 1365 0.4293 MSKRQEDETNIATNLDSRFNQTLRNVQGLLKGRSIPGKILLSRRSDPPDNSKISNNPKSKTSSPIYKRSFSYNDAGPSNHTSGAVEEEFHSTSKPISIANARKLKVSTSFGGSLSEEIRKSTMGARATDSARVMKFTKVLSETVVILDKLRELAWSGVPDNMRPKVWRLLLGYAPPNSDRTEGVLRRKRLEYLDCISQYYDIPDSERSDDEVNMLRQIGVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYFEGDIDNWSMFDLSPDTISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRQMEDQGLEVLQFAFRWFNCLLIREIPFHLITRLWDTYLAEVEALPDFLVYIFASFLLTWSDKLQKFDFQELVMFLQRLPTENWTHQELEMVLSRAFMWHTMFNNSPSHLAS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02447 454 Pfam Rab-GTPase-TBC domain 160 405 IPR000195 -
Spst2g02447 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 320 442 IPR035969 -
Spst2g02447 454 MobiDBLite consensus disorder prediction 47 84 - -
Spst2g02447 454 FunFam TBC domain containing protein 319 454 - -
Spst2g02447 454 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 103 427 - -
Spst2g02447 454 FunFam TBC1 domain family member 131 183 - -
Spst2g02447 454 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 134 340 IPR035969 -
Spst2g02447 454 SMART tbc_4 154 410 IPR000195 -
Spst2g02447 454 FunFam TBC1 domain family, member 22B 188 318 - -
Spst2g02447 454 MobiDBLite consensus disorder prediction 37 84 - -
Spst2g02447 454 ProSiteProfiles TBC/rab GAP domain profile. 157 384 IPR000195 -
Spst2g02447 454 Gene3D - 319 454 - -
Spst2g02447 454 Gene3D - 132 183 - -
Spst2g02447 454 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 194 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02447 Spst-Chr2 24113386 24118888 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02447 K20360 - gmx:100819281 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00315 5 2660651 2666731 Spst2g02447 2 24113386 24118888 PCT