Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00311 ATGGGAAAGAGAGTACTATTCGTTCTTGTAGCAGTGGCCCTTGTTATGGTGCCAAAAAATGTGAGTGCTCAAAACTGTGGGTGTGCTGAAGGGTTATGTTGCAGCCAACATGGATACTGTGGTACTGGTGAAGCATACTGTGGCACAGGGTGCCAACAGGGACCTTGTACTACAACAAGTTCACCTCCCAACGATGTTAATGTTGCTAACATTGTCACAGCAGAATTTTTCAATGGCATAATTGATCAAGCTGATTCTGGTTGTGCTGGCAAGAGCTTTTACACGCGAGATACTTTCCTCAGTGCTCTCAATTCCTACAATGAATTCGGTAGAGTTGGTTCCGAGGATGACTCCAAACGCGAGATTGCAGCTGCTTTTGCTCATTTCACACATGAAACTGGACATTTTTGTTACATTGAAGAGATCGACGGTGCAAGCAAGGACTACTGCGACGAGGAAACGATTGCACAGTATCCATGCTCTTCTAGCAAAGGCTACCACGGTCGTGGTCCCATCCAATTGTCATGGAACTTCAACTATGGACCAGCAGGACAGGACAACAATTTCGATGGATTGAAGGCGCCAGAAACAGTGTCGAATGATGCTGTGGTGTCTTTCAAGACAGCATTGTGGTACTGGATGAAGCACGTGCGCCCTGTCATCAACCAGGGCTTTGGTGCAACCATCAGAGCCATTAATGGTCAACTTGAGTGTGATGGTGCCAACCCCTCCACTGTTCAAGCTCGTGTTAATTACTACACTGAATACTGCACACAATTGGGTGTTGCCACTGGTGATAATCTTACATGCTAA 813 0.4625 MGKRVLFVLVAVALVMVPKNVSAQNCGCAEGLCCSQHGYCGTGEAYCGTGCQQGPCTTTSSPPNDVNVANIVTAEFFNGIIDQADSGCAGKSFYTRDTFLSALNSYNEFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEETIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGQDNNFDGLKAPETVSNDAVVSFKTALWYWMKHVRPVINQGFGATIRAINGQLECDGANPSTVQARVNYYTEYCTQLGVATGDNLTC 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00311 270 SUPERFAMILY Plant lectins/antimicrobial peptides 21 61 IPR036861 GO:0008061
Spst5g00311 270 FunFam Class IV chitinase 20 69 - -
Spst5g00311 270 ProSitePatterns Chitin recognition or binding domain signature. 28 47 IPR018371 GO:0008061
Spst5g00311 270 Gene3D - 20 67 IPR036861 GO:0008061
Spst5g00311 270 SUPERFAMILY Lysozyme-like 68 270 IPR023346 -
Spst5g00311 270 PIRSF Endochitinase 2 270 IPR016283 GO:0004568|GO:0005975
Spst5g00311 270 ProSiteProfiles Chitin-binding type-1 domain profile. 23 58 IPR001002 GO:0008061
Spst5g00311 270 ProSitePatterns Chitinases family 19 signature 1. 88 110 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst5g00311 270 CDD chitinase_GH19 72 270 - -
Spst5g00311 270 Gene3D Endochitinase, domain 2 142 200 - -
Spst5g00311 270 Pfam Chitin recognition protein 23 56 IPR001002 GO:0008061
Spst5g00311 270 Gene3D - 68 270 - -
Spst5g00311 270 ProSitePatterns Chitinases family 19 signature 2. 204 214 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst5g00311 270 PANTHER CHITINASE-RELATED 6 270 - -
Spst5g00311 270 FunFam Endochitinase PR4 59 148 - -
Spst5g00311 270 SMART ChitinBD_3 25 56 IPR001002 GO:0008061
Spst5g00311 270 FunFam Endochitinase (Chitinase) 140 200 - -
Spst5g00311 270 CDD ChtBD1 28 52 - -
Spst5g00311 270 Pfam Chitinase class I 223 270 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst5g00311 270 Pfam Chitinase class I 71 216 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00311 Spst-Chr5 2657022 2657979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00311 1 270 Glycoside Hydrolase AT3G54420 68.148 3.49e-135 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00311 K01183 - gmx:100776582 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00311 5 2657022 2657979 Spst5g00311 5 2657022 2657979 ECH
Spst5g00311 5 2657022 2657979 Spst2g02451 2 24152663 24153612 PCT