Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02451 ATGAGGAAGGTTGCAGGGATTGTGGCAAGCTTAGTCATGCTAGTGATGATGATGGTTCCAAAAACTGTGAGTGACAAAAGCATCAACACCATCGTCACAGAACAATTCTTCGACGGCATAATCAATCAGGCTGATCCTGGTTGTGCGGGGAGGAGCTTCTACTCGCGTGATGCTTTCCTCAAAGCTCACAAGTCCTACCATCGGTTTGGTATGCTCAGTGACCAAGATGATTCCCATCGTGAAGTTGCAGCTGCTTTTGCCCATTTCACCCTTGAAACTAGACATTTCTGCTACATAGAAGAGATTGGAGGAACATCAAGGGACTACTGTGATGAAAGCAACACTGAGTTCCCATGTGTCCCTAACAAAGGGTACTATGGTCGGGGACCTATCCAACTATCATGGAACTTTAACTATGGACCAGCAGGGCAGAACATAGGTTTTGATGGGTTGAATGCTCCAGAGACAGTGGCCAATGACCCTGTTGTGTCCTTCAAGACAGCATTGTGGTACTGGATGGAGTTTGTTCGCCCTGTCTTGGACCAGGGCTTTGGAGCAACCATTAGAGCCATCAATGGCCGAGTTGAATGTAATGGAGGAAACCCTATCACTGTTCGTGCTCGTGTTCGTTACTACATCCAGTATTGTTCTCAACTTGGTGTTGATCCTGGTGAAAATCTTTATTGCTAA 690 0.4638 MRKVAGIVASLVMLVMMMVPKTVSDKSINTIVTEQFFDGIINQADPGCAGRSFYSRDAFLKAHKSYHRFGMLSDQDDSHREVAAAFAHFTLETRHFCYIEEIGGTSRDYCDESNTEFPCVPNKGYYGRGPIQLSWNFNYGPAGQNIGFDGLNAPETVANDPVVSFKTALWYWMEFVRPVLDQGFGATIRAINGRVECNGGNPITVRARVRYYIQYCSQLGVDPGENLYC 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02451 229 ProSitePatterns Chitinases family 19 signature 1. 48 70 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst2g02451 229 ProSitePatterns Chitinases family 19 signature 2. 163 173 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst2g02451 229 SUPERFAMILY Lysozyme-like 27 229 IPR023346 -
Spst2g02451 229 PANTHER CHITINASE-RELATED 24 229 - -
Spst2g02451 229 FunFam Endochitinase (Chitinase) 100 159 - -
Spst2g02451 229 Gene3D Endochitinase, domain 2 100 157 - -
Spst2g02451 229 PIRSF Endochitinase 4 229 IPR016283 GO:0004568|GO:0005975
Spst2g02451 229 Gene3D - 27 229 - -
Spst2g02451 229 FunFam Endochitinase PR4 17 108 - -
Spst2g02451 229 Pfam Chitinase class I 183 229 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst2g02451 229 Pfam Chitinase class I 31 174 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst2g02451 229 CDD chitinase_GH19 32 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02451 Spst-Chr2 24152663 24153612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02451 18 229 Glycoside Hydrolase AT3G54420 68.868 5.80e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02451 K01183 - gmx:100527091 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02451 2 24152663 24153612 Spst2g02451 2 24152663 24153612 ECH
Spst5g00311 5 2657022 2657979 Spst2g02451 2 24152663 24153612 PCT