Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00307 ATGAGGTGTACTCGAATTGAAGGCGAGTTATTGAGCTCAATGCGAGCAGAGTTGGCATCTTTGTCATCTCAACCTTCCGTCCCCGCACGAGCGGCATCCCCGATTCATGTCGGCACAAAGGAGAGTTGTGATGCTCCCGATAGAGGGGCAGAGGTTGCTCCTACCGACACCTGCCGACCGTCGGCTGTATGTTGCGGGTCCTCCCGAGCATTTGGTGGCATACGGAAGAGGCTGAAAAAGCAAAGGAAGTTGTGCATGAATCACCACCACCACCATCTCGCTTACGACGACTCGGTGCAACTGGCAGCGACTATCGGGACCACTCCCATACGGTTAGATATGCCACCCGAAGTCGTATGCGGGACCAAGACGATCCCTTTTTTCTTACTCCAAAGGGATATTTTTGATCTTCTCGCTGATACTCGATATGTTATGTGTATCGGTGTTGCGGCTTTGGGAATTAGGAAGATCCGCTATCTCTATGGATTTGTTGACCCTGTTGCCATTCGATCAGTTGGGAATAAAGTCGAAGAGGTGCAAACGTACTTAATAGAGGCATTTCAAAATGGGGGCAAAGAAGTCTACTTAGCACCTTACTTGCATCGAGCTTTGGAAGCTCACCTAAGGTTGCAAGGTCTTCCATCTCATGCTAGAAAGAAGTTGACGTATATTGCACCAAAGCTTCGTTGCTCTCGCATTGCACCTCCCTTCAAAATCTCAAAAAACCACTCTCTCTCGATCACCGGGAGAACCGAACCGAACTCCTCCGCCGCCTCTCTCGCCGTCGCGCCCTCCGGTCACATCCTCCTCGTTTCAACCTCTGCCGGAATCCGCCAATTAGGTTGTGATCAACCTCTCACAGGTTCGTTACTTCTTATCCAATTCCTCTCTCGCCTTCCTCCTCATTCGGTTTCTCTTTCCAATTCCGCTCTGCTTGCTTTATATTTGCATGCATGCTTTGATCCTCTTCAAACAGCTCTTAAATTAGGGTTTTCACCTTCGGAGAAGCCGCAGTTTCCCGGGAGGACCACAACGGAAGGTTTCTTTCTGTCTGGGGAACTGGAGTGGAGGCCTAATAATTCGTATGCGTTGGGGGCTCGGGGGGCTCGGAACAGAGGAAGGGATATTCCCAATGTCTTCCAAGAATCTTTGCGAATCTCTCCCTCTCTGTTCCCACCGGCTTCAAAATCTCAAAGACCAGATCGTTCGAAGATGTTGAAAGCCCTTTCCCTACCTTTCCGGATTGCCTCTCCACCTCTCTCTGTTTTCACAGTTGCTTCTGCCATTTCTGGGCAGCCCAAATTCTCCAATGGATATGGCCGCCGAAAATCTGACAGAGAAGGGGCAATTAAATCTGAGAATAAAATCCTGTCAGGCAAATTAAATGCCAGTAGATTGGCAAATACAGGTGCAGTGACTGGCAGTAAAGGTGCCAGTTACGAGAGTCCTTCACACGATCGATTAGTATATATAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAAGTGAAAAATGGATCCACATATTCTGGAATCTTTCATGCAACAAACACAGACAAAGACTTTGGAATCATTTTGAAAATGGCCCGCATAACAAAAGATTGTTCTTCACGAGGACAGAAATCTGGTGCAGAATTTTTCAGCAAGCCCCCTTCCAAGATTTTAATTATACCTGCCAAAGACCTTGTCCAAGTTACAGCACAGGATGTTGCTATTGCCAGGGATGGTTTACCTAATGAATCTCATAATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTAACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGATGATCCACAATGCCCAGAACTGGAAAACATATTTGATGGCCACTGGAATAGGGGATGGGATCAGTTCGAAACAAATGAGGCATTGTTTGGTGTAAAGAGTACATTCAATGAGGAACTCTATACAACAAAGCTTGAAAAAGGACCTCAGACAAGAGAATTGGAAAAGCAAGCTTTAAGAATAGCAAAAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCGGAGGAAAGAGGCTTTCACTTGCATGAAGACTTTGATATTGATGAAGAAACTAGATTCTCTTCTGTCTATAGGGGTAAAGGTGCTGATGACAGTGGATTTGAAGAGGACGTAATGTTTAATAAGAGGCCTAGTGAAATAAGTGGTGGCAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCCTCCTCCATGGATCACACACAATCATCTCAGTCAAGTACCAGTGTGGATTTAAGCCGATATGGTTCTCATGATCACGCTAAGCAGTTAGCATCTGAACTCCCTTCTAAAAGTTCTGTATCAGGGGATGGGGAAAGCAGGATTCTGGAGAACTCAATTAGTAATCAGCCTGGAGACAATGACACGAAGGAAGAAAATCTGATTCAAACTGAGGATGTTCAACTGTCAAAATCTGAGGATTCGCGGGGTCCACTCTACTTGAAGAAGGATGGCTCTGATAAAGGGTTATTATCGGCTAATGCCAGCTCCTATGCCCCTTCATCTCATTCTTCATCAAAAACTCATGAAAAGATGGGATCACATGAAGATTTGATTGAGGGTTCAGCATCTGGCAAGGTTAATGAGGAAACAAAATCTGCAGCATCTTCTGGTCCTGCTTTATCTCCAAGTTCATCAGTTGGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCGAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCGCTCCAGTGTCGGATGGTTCTTACTATTTTCCAACTACTGTAGCTACTGTACCAAGTATGGCAGGCATGCCCATGGGTGTTGGAATTGGACCTACTTTTGCTGGTCCACAACCTATGATGTATAATCCTCAGGTAGCGCAAATGCCGTCTCAAGCTTATTTTCATCCGAATGCACCACAGTATGGACAGCTGCTTGGTCATCCTAGGCAAGCTTTATACATGCCGAGTTACCTGCCTGAAATGCCATACAAGGGACGGGATTATTGA 3081 0.4563 MRCTRIEGELLSSMRAELASLSSQPSVPARAASPIHVGTKESCDAPDRGAEVAPTDTCRPSAVCCGSSRAFGGIRKRLKKQRKLCMNHHHHHLAYDDSVQLAATIGTTPIRLDMPPEVVCGTKTIPFFLLQRDIFDLLADTRYVMCIGVAALGIRKIRYLYGFVDPVAIRSVGNKVEEVQTYLIEAFQNGGKEVYLAPYLHRALEAHLRLQGLPSHARKKLTYIAPKLRCSRIAPPFKISKNHSLSITGRTEPNSSAASLAVAPSGHILLVSTSAGIRQLGCDQPLTGSLLLIQFLSRLPPHSVSLSNSALLALYLHACFDPLQTALKLGFSPSEKPQFPGRTTTEGFFLSGELEWRPNNSYALGARGARNRGRDIPNVFQESLRISPSLFPPASKSQRPDRSKMLKALSLPFRIASPPLSVFTVASAISGQPKFSNGYGRRKSDREGAIKSENKILSGKLNASRLANTGAVTGSKGASYESPSHDRLVYITTCLIGHQVEVQVKNGSTYSGIFHATNTDKDFGIILKMARITKDCSSRGQKSGAEFFSKPPSKILIIPAKDLVQVTAQDVAIARDGLPNESHNDMHQEIMVDSLISQSRNVDLGRELKPWVPDEDDPQCPELENIFDGHWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAKEIEGEETQDLHLAEERGFHLHEDFDIDEETRFSSVYRGKGADDSGFEEDVMFNKRPSEISGGKGNDGARTLANSSSMDHTQSSQSSTSVDLSRYGSHDHAKQLASELPSKSSVSGDGESRILENSISNQPGDNDTKEENLIQTEDVQLSKSEDSRGPLYLKKDGSDKGLLSANASSYAPSSHSSSKTHEKMGSHEDLIEGSASGKVNEETKSAASSGPALSPSSSVGSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPAPVSDGSYYFPTTVATVPSMAGMPMGVGIGPTFAGPQPMMYNPQVAQMPSQAYFHPNAPQYGQLLGHPRQALYMPSYLPEMPYKGRDY 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00307 1026 Gene3D - 492 558 - -
Spst5g00307 1026 MobiDBLite consensus disorder prediction 815 840 - -
Spst5g00307 1026 MobiDBLite consensus disorder prediction 883 922 - -
Spst5g00307 1026 MobiDBLite consensus disorder prediction 745 771 - -
Spst5g00307 1026 SMART LsmAD_2 645 716 IPR009604 -
Spst5g00307 1026 Pfam Ataxin 2 SM domain 485 569 IPR025852 -
Spst5g00307 1026 MobiDBLite consensus disorder prediction 847 864 - -
Spst5g00307 1026 Pfam LsmAD domain 645 715 IPR009604 -
Spst5g00307 1026 MobiDBLite consensus disorder prediction 783 814 - -
Spst5g00307 1026 Coils Coil 666 686 - -
Spst5g00307 1026 Pfam Ataxin-2 C-terminal region 910 922 IPR009818 -
Spst5g00307 1026 PANTHER ATAXIN 2-RELATED 459 1021 IPR045117 GO:0003723
Spst5g00307 1026 MobiDBLite consensus disorder prediction 733 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00307 Spst-Chr5 2629390 2641604 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00307 - - gmx:100782491 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00307 5 2629390 2641604 Spst5g00307 5 2629390 2641604 ECH
Spst5g00307 5 2629390 2641604 Spst4g02186 4 62607538 62621723 PCT