Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst5g00279 ATTGATCACTCGGTAGTAGAAAGTTTTGAAGGAGAAGGAAGGGCCTGCATCACAGCAAGAGTATATCCCACGATAGCCATTGATGACATGGCACAGTTATATGTTTTCAACAATGGAACTGCGTCTGTCGAGATCACAAAACTGAGTGCTTGGAGCATGAAGAAGGCAAAAATAAACTGA 180 0.4222 IDHSVVESFEGEGRACITARVYPTIAIDDMAQLYVFNNGTASVEITKLSAWSMKKAKIN 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst5g00279 59 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 56 IPR013320 -
Spst5g00279 59 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 58 - -
Spst5g00279 59 Pfam Glycosyl hydrolases family 32 C terminal 1 52 IPR013189 -
Spst5g00279 59 Gene3D - 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst5g00279 Spst-Chr5 2472387 2472566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst5g00279 1 59 Glycoside Hydrolase AT1G55120 64.407 6.65e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst5g00279 K01193 - gmx:100776791 104.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst5g00279 5 2472387 2472566 Spst4g02236 4 63146371 63150382 PCT